Cow genome map
| Conread name: | ruio04_d15.y1 |
| Conread position: | 10-325 |
| Cow position: | chr6:43548521-43548836 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 15-389 |
| Cow position: | chr6:23567939-23568328 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 20-386 |
| Cow position: | chr6:48872692-48873055 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 141, 21 |
| Conread position: | 88-389 |
| Cow position: | chr6:65819004-65819317 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 91-352 |
| Cow position: | chr6:38917466-38917738 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-354 |
| Cow position: | chr6:14929021-14928753 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 89 |
| Conread position: | 91-357 |
| Cow position: | chr6:41410175-41409900 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 241 |
| Conread position: | 91-358 |
| Cow position: | chr6:10536405-10536683 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-386 |
| Cow position: | chr6:14950086-14950383 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 187 |
| Conread position: | 91-386 |
| Cow position: | chr6:16418117-16418413 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 129 |
| Conread position: | 91-389 |
| Cow position: | chr6:889129-888822 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 91-389 |
| Cow position: | chr6:11020232-11019923 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:17387097-17386788 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:18912161-18912469 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:20215822-20216131 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:20581205-20581511 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 91-389 |
| Cow position: | chr6:33808860-33809169 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:39080491-39080182 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:45479514-45479823 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:45976073-45975764 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:55361221-55361530 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:57329852-57329543 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:63177617-63177308 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr6:63714702-63715011 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-394 |
| Cow position: | chr6:27365740-27365432 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 94 |
| Conread position: | 91-394 |
| Cow position: | chr6:44920995-44920684 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 88 |
| Conread position: | 91-396 |
| Cow position: | chr6:21163877-21163561 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-396 |
| Cow position: | chr6:34017150-34017464 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-428 |
| Cow position: | chr6:46283531-46283870 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 105-389 |
| Cow position: | chr6:39912882-39912587 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 112-352 |
| Cow position: | chr6:727090-727323 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 112-375 |
| Cow position: | chr6:10598538-10598280 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 112-386 |
| Cow position: | chr6:16410607-16410324 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 113-287 |
| Cow position: | chr6:35872083-35872259 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 113-382 |
| Cow position: | chr6:23529498-23529220 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 113-386 |
| Cow position: | chr6:7216343-7216064 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 113-397 |
| Cow position: | chr6:15991391-15991691 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 114-358 |
| Cow position: | chr6:32420491-32420244 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 75 |
| Conread position: | 114-386 |
| Cow position: | chr6:34494223-34493944 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 114-390 |
| Cow position: | chr6:41120137-41119862 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 115-319 |
| Cow position: | chr6:6705883-6705674 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 115-364 |
| Cow position: | chr6:1525196-1524938 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 115-364 |
| Cow position: | chr6:38779672-38779930 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 115-389 |
| Cow position: | chr6:45937829-45937544 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 116-385 |
| Cow position: | chr6:46948364-46948085 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 116-386 |
| Cow position: | chr6:15137624-15137904 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 272 |
| Conread position: | 116-389 |
| Cow position: | chr6:2875485-2875769 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 116-389 |
| Cow position: | chr6:12971945-12971661 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 116-389 |
| Cow position: | chr6:28000847-28001131 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 116-389 |
| Cow position: | chr6:55903638-55903354 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 163 |
| Conread position: | 117-385 |
| Cow position: | chr6:2110864-2111132 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 117-389 |
| Cow position: | chr6:20451506-20451225 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 118-376 |
| Cow position: | chr6:38872981-38873250 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 118-386 |
| Cow position: | chr6:479093-478819 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 266 |
| Conread position: | 118-386 |
| Cow position: | chr6:8753908-8754186 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 118-386 |
| Cow position: | chr6:15275693-15275971 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 270 |
| Conread position: | 118-386 |
| Cow position: | chr6:24242833-24242556 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 269 |
| Conread position: | 123-389 |
| Cow position: | chr6:31912633-31912910 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 124-382 |
| Cow position: | chr6:43779231-43778967 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 119 |
Show alignments to all cow chromosomes.