Cow genome map
| Conread name: | ruio04_d15.y1 |
| Conread position: | 15-390 |
| Cow position: | chr9:61519938-61519546 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 18-320 |
| Cow position: | chr9:23367727-23368034 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 24-394 |
| Cow position: | chr9:9672641-9672252 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 86-389 |
| Cow position: | chr9:50840942-50840626 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 88-389 |
| Cow position: | chr9:34238253-34238565 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 101 |
| Conread position: | 91-317 |
| Cow position: | chr9:9558624-9558862 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 103 |
| Conread position: | 91-375 |
| Cow position: | chr9:25701690-25701981 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-382 |
| Cow position: | chr9:24996854-24996562 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 97 |
| Conread position: | 91-386 |
| Cow position: | chr9:11439202-11439510 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 91-386 |
| Cow position: | chr9:29106378-29106073 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 103 |
| Conread position: | 91-386 |
| Cow position: | chr9:30675577-30675273 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 186 |
| Conread position: | 91-386 |
| Cow position: | chr9:31811080-31810775 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 103 |
| Conread position: | 91-386 |
| Cow position: | chr9:42570719-42570413 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 298 |
| Conread position: | 91-386 |
| Cow position: | chr9:43302101-43302403 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 199 |
| Conread position: | 91-386 |
| Cow position: | chr9:44202577-44202882 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:3052767-3052459 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 92 |
| Conread position: | 91-389 |
| Cow position: | chr9:5452137-5452446 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:7103728-7104037 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:22656301-22655992 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 91-389 |
| Cow position: | chr9:24424025-24423716 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:33843826-33843517 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:35624817-35624508 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:36829549-36829858 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 91-389 |
| Cow position: | chr9:37173902-37174211 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:37253907-37253598 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:42475584-42475889 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:43494551-43494242 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:43496637-43496328 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:48794789-48795098 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 92 |
| Conread position: | 91-389 |
| Cow position: | chr9:60409905-60409596 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-389 |
| Cow position: | chr9:62817718-62818027 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 91-396 |
| Cow position: | chr9:13620494-13620810 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 112-345 |
| Cow position: | chr9:38346676-38346915 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 112-354 |
| Cow position: | chr9:6328931-6329180 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 112-385 |
| Cow position: | chr9:20900452-20900170 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 128 |
| Conread position: | 112-387 |
| Cow position: | chr9:28702932-28702645 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 112-389 |
| Cow position: | chr9:21461936-21461656 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 162 |
| Conread position: | 114-358 |
| Cow position: | chr9:2681968-2681713 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 114-371 |
| Cow position: | chr9:6264161-6263897 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 115-319 |
| Cow position: | chr9:4543122-4542908 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 115-346 |
| Cow position: | chr9:21007769-21008011 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 136 |
| Conread position: | 115-384 |
| Cow position: | chr9:6705047-6705327 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 115-385 |
| Cow position: | chr9:32985848-32985568 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 115-429 |
| Cow position: | chr9:197752-198068 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 116-247 |
| Cow position: | chr9:39215103-39214968 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 116-389 |
| Cow position: | chr9:22803174-22803457 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 116-389 |
| Cow position: | chr9:46627789-46627505 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 117-358 |
| Cow position: | chr9:40131381-40131123 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 117-375 |
| Cow position: | chr9:18506352-18506616 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 117-386 |
| Cow position: | chr9:42868395-42868674 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 118-397 |
| Cow position: | chr9:16159976-16159687 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 135-371 |
| Cow position: | chr9:51760587-51760348 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 56 |
Show alignments to all cow chromosomes.