Cow genome map

Conread name: ruio19_k16.y1

Conread position: 1-299
Cow position: chr5:53855241-53854952 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 61, 100

Conread position: 1-306
Cow position: chr5:30276234-30275927 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 25

Conread position: 1-323
Cow position: chr5:694107-693783 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 31

Conread position: 1-366
Cow position: chr5:7277444-7277052 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 344

Conread position: 1-366
Cow position: chr5:27656411-27656041 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 239

Conread position: 1-379
Cow position: chr5:26467154-26466794 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 140

Conread position: 1-381
Cow position: chr5:7192977-7192595 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 26

Conread position: 1-383
Cow position: chr5:10479087-10479481 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 135

Conread position: 1-386
Cow position: chr5:50728859-50728466 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 332

Conread position: 1-387
Cow position: chr5:54722207-54721814 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 237

Conread position: 1-388
Cow position: chr5:34192478-34192078 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 173

Conread position: 1-392
Cow position: chr5:71064110-71063711 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 11

Conread position: 1-394
Cow position: chr5:4388735-4388330 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 98

Conread position: 1-395
Cow position: chr5:7553314-7552919 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 194

Conread position: 1-395
Cow position: chr5:31634981-31634589 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 11

Conread position: 1-395
Cow position: chr5:58004777-58004382 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 94

Conread position: 1-396
Cow position: chr5:31217646-31217244 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 236

Conread position: 1-397
Cow position: chr5:59082660-59083058 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 121

Conread position: 1-397
Cow position: chr5:62377914-62377518 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 202

Conread position: 1-397
Cow position: chr5:66257180-66256783 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 239

Conread position: 1-399
Cow position: chr5:1338367-1338772 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 195

Conread position: 1-399
Cow position: chr5:10261711-10262127 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 185

Conread position: 1-399
Cow position: chr5:40928473-40928878 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 22

Conread position: 1-399
Cow position: chr5:41228492-41228899 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 136

Conread position: 1-399
Cow position: chr5:56442814-56442407 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 236

Conread position: 1-400
Cow position: chr5:14904524-14904932 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 147

Conread position: 1-401
Cow position: chr5:2918012-2917609 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 151

Conread position: 1-401
Cow position: chr5:3500575-3500981 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 125

Conread position: 1-401
Cow position: chr5:5715531-5715939 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 335

Conread position: 1-401
Cow position: chr5:5937856-5937453 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 106

Conread position: 1-401
Cow position: chr5:6151275-6151685 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 333

Conread position: 1-401
Cow position: chr5:6571697-6572101 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 228

Conread position: 1-401
Cow position: chr5:6576030-6576444 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 115

Conread position: 1-401
Cow position: chr5:7042782-7042389 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 76

Conread position: 1-401
Cow position: chr5:7175855-7175445 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 85

Conread position: 1-401
Cow position: chr5:7498428-7498838 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 333

Conread position: 1-401
Cow position: chr5:10853278-10853687 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 39

Conread position: 1-401
Cow position: chr5:10922402-10921992 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 32

Conread position: 1-401
Cow position: chr5:14551046-14551454 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 325

Conread position: 1-401
Cow position: chr5:14630376-14630783 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 39

Conread position: 1-401
Cow position: chr5:16085273-16085664 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 133

Conread position: 1-401
Cow position: chr5:18250604-18250199 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 322

Conread position: 1-401
Cow position: chr5:18404513-18404909 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 185

Conread position: 1-401
Cow position: chr5:19978352-19978767 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 245

Conread position: 1-401
Cow position: chr5:21189774-21189368 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 169

Conread position: 1-401
Cow position: chr5:24087493-24087903 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 333

Conread position: 1-401
Cow position: chr5:24102207-24101797 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 333

Conread position: 1-401
Cow position: chr5:24299570-24299160 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 333

Conread position: 1-401
Cow position: chr5:28528788-28529174 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 267
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 103, 8

Conread position: 1-401
Cow position: chr5:29742001-29742414 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 336

Conread position: 1-401
Cow position: chr5:29969165-29968755 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 333

Conread position: 1-401
Cow position: chr5:30582882-30582473 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 235

Conread position: 1-401
Cow position: chr5:32088228-32088631 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 53

Conread position: 1-401
Cow position: chr5:32964503-32964913 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 165

Conread position: 1-401
Cow position: chr5:34300425-34300029 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 115

Conread position: 1-401
Cow position: chr5:34559691-34559293 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 253

Conread position: 1-401
Cow position: chr5:34709324-34708916 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 334

Conread position: 1-401
Cow position: chr5:35207793-35207389 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 244

Conread position: 1-401
Cow position: chr5:39936659-39936247 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 327

Conread position: 1-401
Cow position: chr5:41410882-41411289 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 40

Conread position: 1-401
Cow position: chr5:42676801-42676390 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 92

Conread position: 1-401
Cow position: chr5:43437387-43437795 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 79

Conread position: 1-401
Cow position: chr5:43984640-43984231 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 119

Conread position: 1-401
Cow position: chr5:45705563-45705158 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 134

Conread position: 1-401
Cow position: chr5:46625723-46626130 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 14

Conread position: 1-401
Cow position: chr5:46677167-46676760 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 144

Conread position: 1-401
Cow position: chr5:46816547-46816955 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 84

Conread position: 1-401
Cow position: chr5:47343431-47343020 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 334

Conread position: 1-401
Cow position: chr5:48225034-48225429 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 27

Conread position: 1-401
Cow position: chr5:48804913-48805314 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 323

Conread position: 1-401
Cow position: chr5:49116796-49117204 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 20

Conread position: 1-401
Cow position: chr5:49522258-49521846 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 185

Conread position: 1-401
Cow position: chr5:49912579-49912152 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 283
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 354

Conread position: 1-401
Cow position: chr5:50599603-50599206 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 13

Conread position: 1-401
Cow position: chr5:51502430-51502032 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 258

Conread position: 1-401
Cow position: chr5:53184947-53185356 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 173

Conread position: 1-401
Cow position: chr5:53835227-53834799 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 345

Conread position: 1-401
Cow position: chr5:55631621-55631211 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 333

Conread position: 1-401
Cow position: chr5:55986193-55985795 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 185

Conread position: 1-401
Cow position: chr5:58770315-58770725 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 333

Conread position: 1-401
Cow position: chr5:62159365-62159778 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 317

Conread position: 1-401
Cow position: chr5:62436676-62436270 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 297

Conread position: 1-401
Cow position: chr5:72007344-72007746 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 35

Conread position: 1-401
Cow position: chr5:72046112-72046516 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 181

Conread position: 1-401
Cow position: chr5:73485331-73485739 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 183

Conread position: 1-402
Cow position: chr5:14636022-14636433 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 333

Conread position: 1-402
Cow position: chr5:42744341-42743937 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 38

Conread position: 1-403
Cow position: chr5:25495854-25496264 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 133

Conread position: 2-312
Cow position: chr5:825764-825445 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 2-312
Cow position: chr5:37609453-37609772 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 2-326
Cow position: chr5:47590039-47590371 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 234

Conread position: 2-333
Cow position: chr5:407997-407658 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-340
Cow position: chr5:47564761-47565107 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-340
Cow position: chr5:47565229-47565575 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-342
Cow position: chr5:54714211-54714558 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 201

Conread position: 2-344
Cow position: chr5:11986628-11986974 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 214

Conread position: 2-345
Cow position: chr5:75754568-75754919 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-365
Cow position: chr5:4041693-4041320 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-365
Cow position: chr5:27906912-27907285 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-378
Cow position: chr5:49103380-49102994 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-383
Cow position: chr5:41980940-41980555 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 233

Conread position: 2-387
Cow position: chr5:43350350-43349955 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-392
Cow position: chr5:6901217-6901613 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 92

Conread position: 2-397
Cow position: chr5:51746774-51746369 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 332

Conread position: 2-399
Cow position: chr5:1059011-1059418 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-399
Cow position: chr5:21188487-21188083 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 167

Conread position: 2-399
Cow position: chr5:48026823-48026417 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 44

Conread position: 2-399
Cow position: chr5:64061883-64061476 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-400
Cow position: chr5:10839922-10840316 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 2-400
Cow position: chr5:11631429-11631837 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 332

Conread position: 2-400
Cow position: chr5:34528109-34527715 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 38

Conread position: 2-401
Cow position: chr5:442753-443162 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:446035-445626 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 333

Conread position: 2-401
Cow position: chr5:1344337-1344742 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 38

Conread position: 2-401
Cow position: chr5:1394895-1395315 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 343

Conread position: 2-401
Cow position: chr5:2394758-2395161 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 117

Conread position: 2-401
Cow position: chr5:4015316-4015725 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:4682945-4683353 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 326

Conread position: 2-401
Cow position: chr5:4753578-4753986 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 139

Conread position: 2-401
Cow position: chr5:4962831-4963239 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 201

Conread position: 2-401
Cow position: chr5:5106778-5106371 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 95

Conread position: 2-401
Cow position: chr5:5924427-5924830 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 174

Conread position: 2-401
Cow position: chr5:6124607-6125015 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 289

Conread position: 2-401
Cow position: chr5:6773121-6772713 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 331

Conread position: 2-401
Cow position: chr5:10772274-10772683 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:12134149-12133740 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 335

Conread position: 2-401
Cow position: chr5:18118419-18118828 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:18491967-18491549 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 12

Conread position: 2-401
Cow position: chr5:20107476-20107880 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 126

Conread position: 2-401
Cow position: chr5:25913273-25912864 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 19

Conread position: 2-401
Cow position: chr5:26053287-26052878 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:28013413-28013004 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:29255658-29256067 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:29634985-29634576 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:31709847-31709447 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 180

Conread position: 2-401
Cow position: chr5:34669539-34669942 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 164

Conread position: 2-401
Cow position: chr5:34682807-34683213 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 147

Conread position: 2-401
Cow position: chr5:36369436-36369845 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 326

Conread position: 2-401
Cow position: chr5:37380640-37380233 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 330

Conread position: 2-401
Cow position: chr5:37626402-37626006 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 321

Conread position: 2-401
Cow position: chr5:41067555-41067161 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 80

Conread position: 2-401
Cow position: chr5:41586830-41586421 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:42283719-42283317 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:44276151-44275742 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:45179293-45179700 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 103

Conread position: 2-401
Cow position: chr5:46667627-46667221 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 133

Conread position: 2-401
Cow position: chr5:46780066-46779663 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 80

Conread position: 2-401
Cow position: chr5:51165755-51166162 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 30

Conread position: 2-401
Cow position: chr5:52822653-52823060 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 139

Conread position: 2-401
Cow position: chr5:53075314-53075723 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:54337454-54337049 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 10

Conread position: 2-401
Cow position: chr5:54927370-54927772 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 80

Conread position: 2-401
Cow position: chr5:54929698-54930100 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 80

Conread position: 2-401
Cow position: chr5:54951561-54951975 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 337

Conread position: 2-401
Cow position: chr5:55723085-55722676 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-401
Cow position: chr5:59147163-59146755 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 175

Conread position: 2-401
Cow position: chr5:68273293-68273702 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-402
Cow position: chr5:72857432-72857020 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 2-405
Cow position: chr5:39216811-39216398 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 332

Conread position: 2-405
Cow position: chr5:51309499-51309095 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 258

Conread position: 3-345
Cow position: chr5:49428765-49429128 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 121

Conread position: 3-399
Cow position: chr5:279625-280031 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 331

Conread position: 3-401
Cow position: chr5:411165-411572 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 34

Conread position: 3-401
Cow position: chr5:6455108-6455516 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 331

Conread position: 3-401
Cow position: chr5:6839618-6840035 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 327

Conread position: 3-401
Cow position: chr5:8996470-8996860 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 56

Conread position: 3-401
Cow position: chr5:9676077-9676482 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 79

Conread position: 3-401
Cow position: chr5:14557900-14558311 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 167

Conread position: 3-401
Cow position: chr5:18557863-18558261 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 234

Conread position: 3-401
Cow position: chr5:27548959-27549362 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 374

Conread position: 3-401
Cow position: chr5:39448004-39448399 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 55

Conread position: 3-401
Cow position: chr5:44708817-44709225 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 331

Conread position: 3-401
Cow position: chr5:46672159-46671752 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 35

Conread position: 3-401
Cow position: chr5:54089239-54088863 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 55

Conread position: 3-401
Cow position: chr5:59064998-59064591 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 325

Conread position: 3-401
Cow position: chr5:66338398-66337998 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 15

Conread position: 3-405
Cow position: chr5:47601318-47600911 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 233

Conread position: 4-387
Cow position: chr5:17027618-17027229 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 17

Conread position: 4-401
Cow position: chr5:6060078-6060484 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 236

Conread position: 4-401
Cow position: chr5:15722772-15723169 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 142

Conread position: 4-401
Cow position: chr5:39363426-39363019 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 330

Conread position: 4-401
Cow position: chr5:57335810-57336217 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 324

Conread position: 4-401
Cow position: chr5:58900490-58900897 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 330

Conread position: 5-401
Cow position: chr5:5681953-5682364 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 5-401
Cow position: chr5:47560007-47560414 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 7-397
Cow position: chr5:19969493-19969891 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 31

Conread position: 7-399
Cow position: chr5:28016605-28016205 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 325

Conread position: 7-400
Cow position: chr5:52040942-52041336 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 51

Conread position: 7-401
Cow position: chr5:41334134-41333737 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 8-393
Cow position: chr5:52645793-52646185 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 250

Conread position: 8-401
Cow position: chr5:27179184-27178782 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 122

Conread position: 8-402
Cow position: chr5:15760826-15761224 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 105

Conread position: 11-399
Cow position: chr5:18702892-18703280 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 242

Conread position: 11-401
Cow position: chr5:18901867-18901467 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 162

Conread position: 13-398
Cow position: chr5:12872997-12872596 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 76

Conread position: 13-400
Cow position: chr5:13259117-13258741 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 121

Conread position: 15-401
Cow position: chr5:21524586-21524200 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 16-399
Cow position: chr5:59782237-59782613 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 107

Conread position: 22-401
Cow position: chr5:23828658-23829045 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 325

Conread position: 23-401
Cow position: chr5:7140566-7140949 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 26-392
Cow position: chr5:70771666-70771307 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 121

Conread position: 29-345
Cow position: chr5:12325060-12325384 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 299

Conread position: 30-395
Cow position: chr5:31560768-31560405 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 32, 155

Conread position: 30-401
Cow position: chr5:2959789-2959408 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 204

Conread position: 36-324
Cow position: chr5:35762801-35762515 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 79

Conread position: 41-381
Cow position: chr5:27058123-27058472 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 33

Conread position: 41-401
Cow position: chr5:43991788-43991429 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 33

Conread position: 43-392
Cow position: chr5:46334299-46333943 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 187

Conread position: 44-401
Cow position: chr5:40827858-40828232 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 27

Conread position: 55-401
Cow position: chr5:5786827-5787183 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 104

Conread position: 55-401
Cow position: chr5:68337029-68337369 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 49

Conread position: 55-401
Cow position: chr5:68593918-68593570 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 56-399
Cow position: chr5:22857135-22857484 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 274

Conread position: 56-401
Cow position: chr5:41951570-41951917 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 118

Conread position: 56-401
Cow position: chr5:52829288-52829639 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 268

Conread position: 57-383
Cow position: chr5:25920297-25920622 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 143

Conread position: 58-321
Cow position: chr5:23565760-23565491 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 59-383
Cow position: chr5:6032480-6032139 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 35

Conread position: 59-387
Cow position: chr5:63312028-63312362 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 44

Conread position: 60-401
Cow position: chr5:76098536-76098883 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 270

Conread position: 62-401
Cow position: chr5:10255048-10254714 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 121

Conread position: 63-401
Cow position: chr5:41603767-41603429 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 243
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 79, 32

Conread position: 65-401
Cow position: chr5:6695023-6694681 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 259

Conread position: 74-401
Cow position: chr5:15362518-15362191 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 210

Conread position: 77-392
Cow position: chr5:34637921-34637597 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 252

Conread position: 80-401
Cow position: chr5:54454956-54454643 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 274, 24

Conread position: 83-399
Cow position: chr5:3695803-3695493 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 61

Conread position: 83-400
Cow position: chr5:54785637-54785960 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 150

Conread position: 83-401
Cow position: chr5:29559060-29558738 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 51

Conread position: 85-401
Cow position: chr5:38379456-38379139 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 19, 42

Conread position: 87-401
Cow position: chr5:29763374-29763058 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 208

Conread position: 93-401
Cow position: chr5:17425687-17426003 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 228

Conread position: 93-401
Cow position: chr5:45941534-45941850 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 240

Conread position: 98-351
Cow position: chr5:29122575-29122830 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 7, 84

Conread position: 105-369
Cow position: chr5:65593342-65593075 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 140, 17

Conread position: 106-345
Cow position: chr5:66112994-66113230 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 163, 27

Conread position: 111-401
Cow position: chr5:295704-295412 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 184

Conread position: 112-401
Cow position: chr5:24577879-24577583 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 219

Conread position: 113-399
Cow position: chr5:23354185-23353889 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 221

Conread position: 113-401
Cow position: chr5:46708096-46707784 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 102, 235

Conread position: 117-401
Cow position: chr5:33775348-33775637 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 17

Conread position: 119-401
Cow position: chr5:44617580-44617292 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 211

Conread position: 122-393
Cow position: chr5:54868649-54868371 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 203

Conread position: 122-401
Cow position: chr5:4166056-4165779 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 47

Conread position: 122-401
Cow position: chr5:41489101-41488817 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 168
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 133, 167

Conread position: 124-401
Cow position: chr5:41608649-41608383 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 113

Conread position: 126-401
Cow position: chr5:67654753-67654473 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 72, 47

Conread position: 127-393
Cow position: chr5:23845127-23845396 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 118, 104

Conread position: 129-394
Cow position: chr5:30302257-30302001 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 152, 110

Conread position: 129-401
Cow position: chr5:67814287-67814009 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 201

Conread position: 132-401
Cow position: chr5:8178556-8178281 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 198

Conread position: 135-401
Cow position: chr5:28026800-28026546 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 135-401
Cow position: chr5:37735794-37735523 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 178

Conread position: 137-397
Cow position: chr5:54125482-54125215 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 108, 25

Conread position: 137-399
Cow position: chr5:58199426-58199159 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 187

Conread position: 137-401
Cow position: chr5:6219362-6219091 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 107, 27

Conread position: 137-401
Cow position: chr5:10066133-10066403 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 118, 193

Conread position: 137-401
Cow position: chr5:12921813-12921545 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 108, 95

Conread position: 137-401
Cow position: chr5:18667724-18667454 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 118, 193

Conread position: 137-401
Cow position: chr5:46734862-46735130 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 118, 45

Conread position: 137-401
Cow position: chr5:51684203-51684467 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 113

Conread position: 137-401
Cow position: chr5:58461279-58461545 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 113, 93

Conread position: 139-401
Cow position: chr5:40896935-40897205 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 96, 23

Conread position: 140-401
Cow position: chr5:28946996-28947264 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 118, 39

Conread position: 141-389
Cow position: chr5:18883203-18883448 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 106, 63

Conread position: 141-401
Cow position: chr5:50900037-50899779 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 62, 111

Conread position: 144-398
Cow position: chr5:62384792-62384528 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 18

Conread position: 144-401
Cow position: chr5:41523578-41523844 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 29

Conread position: 150-401
Cow position: chr5:4434100-4434357 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 95, 180

Conread position: 150-401
Cow position: chr5:54136233-54136491 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 73, 181

Conread position: 151-401
Cow position: chr5:75755982-75755722 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 85, 178

Conread position: 154-365
Cow position: chr5:57933838-57934053 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 92, 164

Conread position: 154-401
Cow position: chr5:47855226-47854974 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 175

Conread position: 163-398
Cow position: chr5:15455142-15454920 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 16

Conread position: 174-401
Cow position: chr5:39749047-39749295 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 56, 171

Conread position: 175-398
Cow position: chr5:9002732-9002960 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 69, 61

Conread position: 175-401
Cow position: chr5:12212913-12212680 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 58, 156

Conread position: 175-401
Cow position: chr5:12337652-12337421 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 75, 154

Conread position: 176-401
Cow position: chr5:32810652-32810879 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 133

Conread position: 177-401
Cow position: chr5:64844890-64845121 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 36

Conread position: 180-401
Cow position: chr5:6585079-6585307 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 61, 151

Conread position: 185-401
Cow position: chr5:71456677-71456899 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 39

Conread position: 187-400
Cow position: chr5:14313627-14313418 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 82, 21

Conread position: 189-392
Cow position: chr5:34523882-34524084 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 25

Conread position: 191-377
Cow position: chr5:13867247-13867436 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 131

Conread position: 199-399
Cow position: chr5:3441696-3441488 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 113

Conread position: 199-401
Cow position: chr5:50923491-50923697 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 99

Conread position: 204-401
Cow position: chr5:58353556-58353354 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 113

Conread position: 205-401
Cow position: chr5:12558228-12558434 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 120

Conread position: 225-401
Cow position: chr5:47471726-47471543 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 106

Conread position: 225-401
Cow position: chr5:47871781-47871961 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 103

Conread position: 227-399
Cow position: chr5:48574502-48574678 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 42, 75

Conread position: 233-401
Cow position: chr5:24643559-24643723 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 39, 0

Conread position: 233-401
Cow position: chr5:35180448-35180276 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 36, 98

Conread position: 238-401
Cow position: chr5:17645768-17645935 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 31, 90

Conread position: 243-401
Cow position: chr5:37384226-37384388 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 28, 85

Conread position: 244-401
Cow position: chr5:27062931-27063092 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 22, 84

Conread position: 267-401
Cow position: chr5:6180821-6180689 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 267-401
Cow position: chr5:26134986-26135121 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 80, 58

Conread position: 267-401
Cow position: chr5:33536893-33536763 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 395-493
Cow position: chr5:25231440-25231339 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 6, 0

Show alignments to all cow chromosomes.