Cow genome map
| Conread name: | ruio19_n10.y1 |
| Conread position: | 1-144 |
| Cow position: | chr12:25299385-25299519 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-147 |
| Cow position: | chr12:3454720-3454858 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-147 |
| Cow position: | chr12:11950163-11950318 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-147 |
| Cow position: | chr12:33976225-33976364 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-147 |
| Cow position: | chr12:39320414-39320551 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-149 |
| Cow position: | chr12:3057113-3057252 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-155 |
| Cow position: | chr12:35310660-35310513 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-157 |
| Cow position: | chr12:15163165-15163328 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-157 |
| Cow position: | chr12:26147144-26146999 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-159 |
| Cow position: | chr12:31276630-31276786 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 1-159 |
| Cow position: | chr12:32374619-32374772 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 82 |
| Conread position: | 1-160 |
| Cow position: | chr12:27663967-27663813 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 1-162 |
| Cow position: | chr12:14223007-14223159 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-162 |
| Cow position: | chr12:26670089-26670243 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-162 |
| Cow position: | chr12:35241079-35240925 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 1-163 |
| Cow position: | chr12:4109069-4109223 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-163 |
| Cow position: | chr12:6188088-6187932 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 1-163 |
| Cow position: | chr12:6206356-6206513 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 1-163 |
| Cow position: | chr12:10942313-10942471 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-163 |
| Cow position: | chr12:22047947-22048101 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-163 |
| Cow position: | chr12:22323248-22323090 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 1-163 |
| Cow position: | chr12:39150026-39149872 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-163 |
| Cow position: | chr12:39738273-39738120 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-165 |
| Cow position: | chr12:34877856-34878018 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 1-166 |
| Cow position: | chr12:32051536-32051699 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 1-169 |
| Cow position: | chr12:13988395-13988557 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-169 |
| Cow position: | chr12:31602796-31602639 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-170 |
| Cow position: | chr12:4014407-4014238 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 1-170 |
| Cow position: | chr12:13995772-13995610 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-170 |
| Cow position: | chr12:25456435-25456605 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 1-170 |
| Cow position: | chr12:35368668-35368828 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-171 |
| Cow position: | chr12:42181103-42180939 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 82 |
| Conread position: | 1-172 |
| Cow position: | chr12:14360668-14360831 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 45 |
| Conread position: | 1-172 |
| Cow position: | chr12:23764510-23764690 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:31269180-31269347 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 1-174 |
| Cow position: | chr12:11659947-11660117 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 149, 52 |
| Conread position: | 1-175 |
| Cow position: | chr12:9482279-9482114 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:12699615-12699448 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 1-176 |
| Cow position: | chr12:40910259-40910096 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:43974315-43974482 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-163 |
| Cow position: | chr12:9055392-9055238 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 144, 51 |
| Conread position: | 2-173 |
| Cow position: | chr12:26749925-26749766 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-144 |
| Cow position: | chr12:22752653-22752790 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 3-147 |
| Cow position: | chr12:24397136-24397004 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 3-147 |
| Cow position: | chr12:43619308-43619444 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 3-154 |
| Cow position: | chr12:37742326-37742468 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 3-155 |
| Cow position: | chr12:38002152-38002307 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 3-156 |
| Cow position: | chr12:37718743-37718598 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 3-176 |
| Cow position: | chr12:34333138-34333307 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 5-147 |
| Cow position: | chr12:4596494-4596634 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 5-163 |
| Cow position: | chr12:7110227-7110383 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 6-168 |
| Cow position: | chr12:4182261-4182106 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 7-158 |
| Cow position: | chr12:6719419-6719562 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 8-163 |
| Cow position: | chr12:37480807-37480659 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 141, 38 |
| Conread position: | 11-170 |
| Cow position: | chr12:44576273-44576426 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 28-184 |
| Cow position: | chr12:2766529-2766680 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 155-433 |
| Cow position: | chr12:10760925-10760646 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 164-422 |
| Cow position: | chr12:10202326-10202071 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 132 |
| Conread position: | 183-437 |
| Cow position: | chr12:42466781-42467042 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 162 |
| Conread position: | 188-418 |
| Cow position: | chr12:8909190-8908958 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 188-422 |
| Cow position: | chr12:4348042-4347799 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 195-422 |
| Cow position: | chr12:27093682-27093455 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 196-420 |
| Cow position: | chr12:9746530-9746753 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 99 |
| Conread position: | 196-422 |
| Cow position: | chr12:48436763-48436513 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 197-415 |
| Cow position: | chr12:31805817-31806037 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 178, 207 |
| Conread position: | 197-422 |
| Cow position: | chr12:6643760-6643988 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 144 |
| Conread position: | 197-435 |
| Cow position: | chr12:28541763-28542009 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 208-362 |
| Cow position: | chr12:15033995-15033837 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 210-431 |
| Cow position: | chr12:39338108-39338335 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 53 |
| Conread position: | 224-422 |
| Cow position: | chr12:4733973-4734172 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 226-416 |
| Cow position: | chr12:27437642-27437446 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 226-423 |
| Cow position: | chr12:10769508-10769706 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 78, 115 |
| Conread position: | 226-433 |
| Cow position: | chr12:34133403-34133188 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 205 |
| Conread position: | 231-418 |
| Cow position: | chr12:36349629-36349446 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 231-420 |
| Cow position: | chr12:36465933-36465752 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 238-420 |
| Cow position: | chr12:36324121-36323945 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 238-420 |
| Cow position: | chr12:36409673-36409496 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 248-415 |
| Cow position: | chr12:7089181-7088999 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 277-442 |
| Cow position: | chr12:1205781-1205610 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 314-422 |
| Cow position: | chr12:24009423-24009313 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.