Cow genome map
| Conread name: | ruio19_n10.y1 |
| Conread position: | 1-136 |
| Cow position: | chr18:29402219-29402358 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-143 |
| Cow position: | chr18:39662810-39662943 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-144 |
| Cow position: | chr18:6399605-6399459 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 1-146 |
| Cow position: | chr18:37308479-37308628 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 1-147 |
| Cow position: | chr18:5701279-5701430 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 1-147 |
| Cow position: | chr18:16659401-16659262 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-147 |
| Cow position: | chr18:23653087-23652947 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 130, 59 |
| Conread position: | 1-147 |
| Cow position: | chr18:43555493-43555347 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 1-149 |
| Cow position: | chr18:5189662-5189523 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:23810089-23809952 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:30676628-30676483 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:34389352-34389212 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:35235992-35235851 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 45 |
| Conread position: | 1-150 |
| Cow position: | chr18:35795191-35795051 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:39710138-39710285 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 69 |
| Conread position: | 1-154 |
| Cow position: | chr18:23648953-23649099 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-157 |
| Cow position: | chr18:4857693-4857546 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 1-158 |
| Cow position: | chr18:3180442-3180587 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 52 |
| Conread position: | 1-158 |
| Cow position: | chr18:26355014-26354864 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-159 |
| Cow position: | chr18:3709261-3709409 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-159 |
| Cow position: | chr18:23941592-23941438 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 1-159 |
| Cow position: | chr18:27078895-27079045 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-159 |
| Cow position: | chr18:38211187-38211337 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-159 |
| Cow position: | chr18:49970622-49970473 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-162 |
| Cow position: | chr18:8208394-8208244 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-162 |
| Cow position: | chr18:39623831-39623986 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 144, 69 |
| Conread position: | 1-163 |
| Cow position: | chr18:45573411-45573563 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:238085-237928 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 148, 52 |
| Conread position: | 1-165 |
| Cow position: | chr18:20998384-20998227 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 69 |
| Conread position: | 1-165 |
| Cow position: | chr18:21969774-21969614 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 1-167 |
| Cow position: | chr18:32253479-32253320 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 1-170 |
| Cow position: | chr18:22045383-22045222 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-170 |
| Cow position: | chr18:22120854-22120696 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-170 |
| Cow position: | chr18:37690181-37690341 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 54 |
| Conread position: | 1-170 |
| Cow position: | chr18:55692847-55693008 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 1-176 |
| Cow position: | chr18:4000377-4000549 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 1-176 |
| Cow position: | chr18:11233445-11233615 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 1-176 |
| Cow position: | chr18:14871574-14871411 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:21751409-21751574 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:31557129-31556961 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 154, 52 |
| Conread position: | 1-183 |
| Cow position: | chr18:6825768-6825590 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 1-183 |
| Cow position: | chr18:53053203-53053029 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 1-186 |
| Cow position: | chr18:21782718-21782893 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 148, 45 |
| Conread position: | 2-147 |
| Cow position: | chr18:35692888-35693041 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 2-155 |
| Cow position: | chr18:52387188-52387043 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 2-163 |
| Cow position: | chr18:18664341-18664182 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 2-163 |
| Cow position: | chr18:47175350-47175196 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-169 |
| Cow position: | chr18:44514118-44514280 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 2-170 |
| Cow position: | chr18:45185904-45186057 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-177 |
| Cow position: | chr18:17195313-17195150 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 3-149 |
| Cow position: | chr18:11672865-11673025 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 100 |
| Conread position: | 3-163 |
| Cow position: | chr18:52251824-52251672 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 3-170 |
| Cow position: | chr18:29945565-29945725 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 3-170 |
| Cow position: | chr18:35950069-35950234 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 3-170 |
| Cow position: | chr18:39811550-39811395 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 3-178 |
| Cow position: | chr18:19796890-19796720 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 4-169 |
| Cow position: | chr18:21528684-21528837 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 6-159 |
| Cow position: | chr18:697186-697041 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 10-162 |
| Cow position: | chr18:21878427-21878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 12-166 |
| Cow position: | chr18:51976062-51976207 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 17-161 |
| Cow position: | chr18:37031876-37032011 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 25-190 |
| Cow position: | chr18:4668454-4668298 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 167-421 |
| Cow position: | chr18:29043176-29042915 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 188-420 |
| Cow position: | chr18:16147865-16147630 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 189-433 |
| Cow position: | chr18:1069837-1069588 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 9, 242 |
| Conread position: | 194-422 |
| Cow position: | chr18:54166104-54165878 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 176, 98 |
| Conread position: | 196-372 |
| Cow position: | chr18:37493356-37493525 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 62 |
| Conread position: | 196-387 |
| Cow position: | chr18:17009390-17009586 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 196-417 |
| Cow position: | chr18:32228620-32228401 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 174, 83 |
| Conread position: | 196-422 |
| Cow position: | chr18:17227958-17227720 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 196-422 |
| Cow position: | chr18:35098438-35098217 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 196-433 |
| Cow position: | chr18:23826953-23826724 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 196-478 |
| Cow position: | chr18:39740266-39740557 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 282 |
| Conread position: | 205-432 |
| Cow position: | chr18:28665925-28666155 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 216-422 |
| Cow position: | chr18:8626377-8626164 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 230-422 |
| Cow position: | chr18:20223020-20222818 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 240-422 |
| Cow position: | chr18:43537733-43537923 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 262-423 |
| Cow position: | chr18:30519013-30519184 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 263-418 |
| Cow position: | chr18:4779068-4779229 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 270-434 |
| Cow position: | chr18:47280830-47280664 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 297-433 |
| Cow position: | chr18:52867332-52867191 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 134 |
Show alignments to all cow chromosomes.