Cow genome map

Conread name: ruio19_n10.y1

Conread position: 1-135
Cow position: chr21:28237580-28237448 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 46

Conread position: 1-140
Cow position: chr21:17193621-17193492 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-143
Cow position: chr21:12739208-12739347 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 90, 18

Conread position: 1-143
Cow position: chr21:14464711-14464845 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-143
Cow position: chr21:28924237-28924383 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 1-145
Cow position: chr21:17184045-17184179 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-147
Cow position: chr21:33847-33996 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 85, 46

Conread position: 1-147
Cow position: chr21:10004758-10004620 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 1-148
Cow position: chr21:868796-868655 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 71, 52

Conread position: 1-150
Cow position: chr21:10264161-10264301 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 1-150
Cow position: chr21:15305171-15305029 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 1-150
Cow position: chr21:15444957-15444815 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 144, 52

Conread position: 1-150
Cow position: chr21:17890430-17890569 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 1-150
Cow position: chr21:18568511-18568371 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-150
Cow position: chr21:23535837-23535979 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 112, 54

Conread position: 1-155
Cow position: chr21:5345006-5345152 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 1-155
Cow position: chr21:8545895-8545747 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 137, 52

Conread position: 1-155
Cow position: chr21:26828846-26828700 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 1-155
Cow position: chr21:40475626-40475772 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 1-156
Cow position: chr21:30938538-30938394 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 52

Conread position: 1-157
Cow position: chr21:37706287-37706138 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 145, 54

Conread position: 1-157
Cow position: chr21:46809638-46809491 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-158
Cow position: chr21:58571-58723 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 125, 32

Conread position: 1-159
Cow position: chr21:11779414-11779267 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 58

Conread position: 1-159
Cow position: chr21:16099437-16099285 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 1-159
Cow position: chr21:28882309-28882458 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 1-159
Cow position: chr21:40457729-40457884 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 148, 35

Conread position: 1-159
Cow position: chr21:42501178-42501327 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 1-162
Cow position: chr21:20160804-20160954 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 1-163
Cow position: chr21:19340104-19339950 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 146, 52

Conread position: 1-163
Cow position: chr21:23980054-23979900 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 1-163
Cow position: chr21:27712109-27711953 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 145, 46

Conread position: 1-163
Cow position: chr21:34209888-34209735 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-164
Cow position: chr21:47784720-47784873 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-165
Cow position: chr21:6291874-6292030 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 1-165
Cow position: chr21:45537313-45537473 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 127, 46

Conread position: 1-170
Cow position: chr21:3135741-3135579 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 45

Conread position: 1-170
Cow position: chr21:25344989-25345151 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 156, 52

Conread position: 1-170
Cow position: chr21:38918326-38918488 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 1-172
Cow position: chr21:8713832-8713668 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 153, 45

Conread position: 1-172
Cow position: chr21:11006643-11006481 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 36

Conread position: 1-175
Cow position: chr21:27677608-27677770 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 1-176
Cow position: chr21:938147-938311 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-176
Cow position: chr21:8430972-8430802 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 156, 52

Conread position: 1-177
Cow position: chr21:18449880-18450049 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 170, 45

Conread position: 1-182
Cow position: chr21:44829631-44829460 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 1-231
Cow position: chr21:47168-47401 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 52

Conread position: 1-303
Cow position: chr21:27521212-27520918 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 80

Conread position: 2-157
Cow position: chr21:4108904-4109050 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 2-162
Cow position: chr21:16796980-16797130 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 2-178
Cow position: chr21:12348894-12349064 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 44

Conread position: 3-156
Cow position: chr21:24296638-24296491 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 6, 25

Conread position: 3-156
Cow position: chr21:40266251-40266396 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 4-158
Cow position: chr21:20213646-20213496 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 141, 42

Conread position: 5-135
Cow position: chr21:31258598-31258720 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 111
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 5-157
Cow position: chr21:42131223-42131065 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 5-168
Cow position: chr21:22718652-22718498 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 145, 48

Conread position: 7-155
Cow position: chr21:38482513-38482653 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 8-168
Cow position: chr21:41829246-41829095 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 8-170
Cow position: chr21:42227564-42227413 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 9-143
Cow position: chr21:11353196-11353323 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 38

Conread position: 16-163
Cow position: chr21:12293164-12293304 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 129, 37

Conread position: 184-420
Cow position: chr21:3649105-3648876 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 186, 10

Conread position: 188-422
Cow position: chr21:28624809-28625043 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 67

Conread position: 189-418
Cow position: chr21:31479190-31479421 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 9, 189

Conread position: 189-420
Cow position: chr21:20575379-20575148 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 11, 72

Conread position: 189-432
Cow position: chr21:30192079-30191844 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 54

Conread position: 194-362
Cow position: chr21:12560344-12560172 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 194-415
Cow position: chr21:665035-664821 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 148

Conread position: 194-433
Cow position: chr21:38678154-38678392 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 5, 25

Conread position: 195-422
Cow position: chr21:6400360-6400123 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 100, 6

Conread position: 196-362
Cow position: chr21:4011974-4012146 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 90

Conread position: 196-364
Cow position: chr21:46327556-46327738 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 196-422
Cow position: chr21:3808419-3808653 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 114, 44

Conread position: 196-423
Cow position: chr21:41728786-41728543 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 196-423
Cow position: chr21:48616357-48616590 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 41

Conread position: 196-435
Cow position: chr21:6053351-6053107 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 97

Conread position: 197-361
Cow position: chr21:49646116-49645957 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 118, 55

Conread position: 199-417
Cow position: chr21:7646521-7646298 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 100, 59

Conread position: 199-433
Cow position: chr21:41430128-41430360 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 106, 18

Conread position: 209-423
Cow position: chr21:8719224-8719004 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 189

Conread position: 217-357
Cow position: chr21:2014184-2014328 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 217-422
Cow position: chr21:9202903-9203115 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 63

Conread position: 221-362
Cow position: chr21:40188305-40188160 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 221-422
Cow position: chr21:4775279-4775482 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 52

Conread position: 226-394
Cow position: chr21:19435805-19435633 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 36

Conread position: 229-419
Cow position: chr21:47868516-47868712 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 74, 51

Conread position: 231-423
Cow position: chr21:18512319-18512520 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 232-433
Cow position: chr21:30644839-30644636 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 72, 108

Conread position: 241-423
Cow position: chr21:13277602-13277785 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 74, 64

Conread position: 265-435
Cow position: chr21:4419270-4419098 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 26, 102

Conread position: 274-422
Cow position: chr21:29252762-29252607 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 275-416
Cow position: chr21:9965100-9964953 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 101

Show alignments to all cow chromosomes.