Cow genome map

Conread name: ruio19_n10.y1

Conread position: 1-136
Cow position: chr24:44987335-44987208 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-143
Cow position: chr24:18313893-18313746 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 1-147
Cow position: chr24:18615041-18615191 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 15

Conread position: 1-147
Cow position: chr24:22079500-22079638 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-147
Cow position: chr24:38693839-38693702 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 1-150
Cow position: chr24:25947822-25947681 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-150
Cow position: chr24:27066268-27066409 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 145, 45

Conread position: 1-153
Cow position: chr24:23046858-23046713 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 144, 45

Conread position: 1-155
Cow position: chr24:18810871-18811015 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-155
Cow position: chr24:33238225-33238071 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 79

Conread position: 1-155
Cow position: chr24:38006678-38006529 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 97, 52

Conread position: 1-156
Cow position: chr24:18695915-18696067 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 89

Conread position: 1-157
Cow position: chr24:16640950-16641100 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 148, 45

Conread position: 1-158
Cow position: chr24:11836364-11836215 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-159
Cow position: chr24:19623895-19624052 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 63

Conread position: 1-159
Cow position: chr24:27906479-27906625 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 1-162
Cow position: chr24:2261707-2261860 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 1-163
Cow position: chr24:43027187-43027033 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 46

Conread position: 1-164
Cow position: chr24:39304881-39304716 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 76, 45

Conread position: 1-169
Cow position: chr24:34272850-34273017 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 92

Conread position: 1-170
Cow position: chr24:4635128-4634967 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 90, 52

Conread position: 1-172
Cow position: chr24:18405241-18405078 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 141, 52

Conread position: 1-172
Cow position: chr24:34465466-34465294 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 74, 141

Conread position: 1-172
Cow position: chr24:39910993-39910830 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 145, 24

Conread position: 1-174
Cow position: chr24:18702438-18702605 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 31

Conread position: 1-175
Cow position: chr24:13626323-13626491 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 141, 62

Conread position: 1-175
Cow position: chr24:18750747-18750911 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-176
Cow position: chr24:250498-250329 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 142, 52

Conread position: 1-177
Cow position: chr24:12120936-12121104 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-177
Cow position: chr24:28787893-28788060 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-178
Cow position: chr24:29677876-29677700 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 31, 63

Conread position: 1-190
Cow position: chr24:11028649-11028468 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 156, 39

Conread position: 2-156
Cow position: chr24:43445973-43445827 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 115, 53

Conread position: 2-158
Cow position: chr24:38428072-38427922 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 44

Conread position: 2-159
Cow position: chr24:27040088-27040237 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 2-163
Cow position: chr24:34533162-34533329 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 3-143
Cow position: chr24:5152565-5152697 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 3-150
Cow position: chr24:18874779-18874642 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 3-150
Cow position: chr24:34006167-34006028 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 137, 43

Conread position: 3-157
Cow position: chr24:162045-162191 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 3-168
Cow position: chr24:39488386-39488545 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 153, 75

Conread position: 3-169
Cow position: chr24:25142651-25142816 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 95, 53

Conread position: 3-170
Cow position: chr24:10840878-10840703 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 3-170
Cow position: chr24:20017386-20017227 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 3-170
Cow position: chr24:21606637-21606476 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 154, 50

Conread position: 3-170
Cow position: chr24:36036016-36035854 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 22

Conread position: 5-170
Cow position: chr24:35210098-35210255 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 187-422
Cow position: chr24:38473439-38473188 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 0

Conread position: 189-362
Cow position: chr24:31104140-31104311 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 49

Conread position: 193-422
Cow position: chr24:43176503-43176738 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 111, 68

Conread position: 196-337
Cow position: chr24:37080413-37080276 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 196-361
Cow position: chr24:39209667-39209837 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 196-399
Cow position: chr24:2615945-2616149 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 63

Conread position: 196-420
Cow position: chr24:31393798-31393568 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 115, 27

Conread position: 196-422
Cow position: chr24:7464419-7464192 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 196-422
Cow position: chr24:44255894-44256130 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 101, 223

Conread position: 196-422
Cow position: chr24:44502989-44502744 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 196-423
Cow position: chr24:36715530-36715755 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 63, 58

Conread position: 196-433
Cow position: chr24:16190446-16190689 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 109, 147

Conread position: 196-433
Cow position: chr24:29070173-29069937 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 108, 71

Conread position: 198-422
Cow position: chr24:23528298-23528068 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 83

Conread position: 199-350
Cow position: chr24:37074624-37074470 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 105, 0

Conread position: 199-381
Cow position: chr24:24539084-24538909 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 98

Conread position: 200-422
Cow position: chr24:27229059-27228840 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 109, 79

Conread position: 202-420
Cow position: chr24:13783472-13783254 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 105, 49

Conread position: 205-375
Cow position: chr24:7030126-7029954 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 102, 122

Conread position: 207-422
Cow position: chr24:39556241-39556451 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 136, 88

Conread position: 213-400
Cow position: chr24:24777370-24777560 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 98, 48

Conread position: 213-422
Cow position: chr24:23012856-23013065 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 93, 72

Conread position: 213-432
Cow position: chr24:29824315-29824093 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 147, 82

Conread position: 215-381
Cow position: chr24:36344681-36344507 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 82

Conread position: 216-422
Cow position: chr24:41009784-41009997 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 0

Conread position: 220-423
Cow position: chr24:27884334-27884129 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 63

Conread position: 221-393
Cow position: chr24:27078775-27078953 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 83, 72

Conread position: 226-423
Cow position: chr24:26906259-26906463 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 88, 0

Conread position: 227-375
Cow position: chr24:5873610-5873462 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 83, 68

Conread position: 241-433
Cow position: chr24:5531854-5532050 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 37

Conread position: 243-433
Cow position: chr24:3530069-3530269 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 249-437
Cow position: chr24:35556544-35556338 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 258-421
Cow position: chr24:10588196-10588035 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 113, 54

Conread position: 262-422
Cow position: chr24:22201734-22201559 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 160

Conread position: 265-394
Cow position: chr24:43554592-43554726 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 270-441
Cow position: chr24:32418644-32418465 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 132

Conread position: 272-422
Cow position: chr24:34721401-34721550 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 92, 42

Conread position: 273-433
Cow position: chr24:20320951-20320787 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 32

Show alignments to all cow chromosomes.