Cow genome map

Conread name: ruio19_n10.y1

Conread position: 1-135
Cow position: chr28:20013504-20013644 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 54

Conread position: 1-143
Cow position: chr28:20968511-20968376 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 97, 69

Conread position: 1-144
Cow position: chr28:22278563-22278424 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 80

Conread position: 1-146
Cow position: chr28:4074038-4074180 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 56

Conread position: 1-146
Cow position: chr28:21263226-21263357 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 1-146
Cow position: chr28:30385221-30385358 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 1-147
Cow position: chr28:5441830-5441693 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-147
Cow position: chr28:13174487-13174350 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 1-147
Cow position: chr28:17680691-17680829 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 1-147
Cow position: chr28:17738084-17737946 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-150
Cow position: chr28:5236535-5236388 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-150
Cow position: chr28:16857038-16856899 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 1-154
Cow position: chr28:6563828-6563683 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 1-155
Cow position: chr28:4163514-4163368 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-155
Cow position: chr28:5630167-5630311 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 1-155
Cow position: chr28:10495232-10495088 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 1-155
Cow position: chr28:32014853-32014997 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 50, 82

Conread position: 1-157
Cow position: chr28:3311155-3311006 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 140, 46

Conread position: 1-158
Cow position: chr28:7885099-7885249 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-158
Cow position: chr28:19024502-19024665 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 1-159
Cow position: chr28:19994881-19994730 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 42, 53

Conread position: 1-159
Cow position: chr28:26304132-26304283 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 145, 61

Conread position: 1-160
Cow position: chr28:5552646-5552489 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 81

Conread position: 1-162
Cow position: chr28:7644811-7644960 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 1-163
Cow position: chr28:659226-659065 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 82, 52

Conread position: 1-163
Cow position: chr28:5199893-5200047 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-163
Cow position: chr28:8716319-8716160 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 56, 81

Conread position: 1-164
Cow position: chr28:16200674-16200519 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-168
Cow position: chr28:16252336-16252181 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 132, 5

Conread position: 1-168
Cow position: chr28:27218391-27218549 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-169
Cow position: chr28:8347800-8347960 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-169
Cow position: chr28:30293520-30293361 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 1-170
Cow position: chr28:2892321-2892485 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 156, 69

Conread position: 1-170
Cow position: chr28:13048215-13048059 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-172
Cow position: chr28:21103759-21103588 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 153, 28

Conread position: 1-172
Cow position: chr28:23296391-23296549 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 164, 45

Conread position: 1-173
Cow position: chr28:9418897-9418718 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 1-174
Cow position: chr28:3484649-3484816 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 23, 59

Conread position: 1-178
Cow position: chr28:6301150-6301319 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 2-142
Cow position: chr28:22183071-22182934 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 89, 55

Conread position: 2-175
Cow position: chr28:3726139-3725976 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 50, 80

Conread position: 3-150
Cow position: chr28:19262516-19262377 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 3-154
Cow position: chr28:11562175-11562032 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 3-165
Cow position: chr28:14657784-14657938 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 3-168
Cow position: chr28:4937171-4937012 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 151, 50

Conread position: 3-175
Cow position: chr28:10615875-10615719 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 52, 78

Conread position: 3-175
Cow position: chr28:34830225-34830385 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 4-170
Cow position: chr28:11398725-11398569 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 4-176
Cow position: chr28:751297-751461 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 4-183
Cow position: chr28:10252845-10252672 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 145, 42

Conread position: 5-147
Cow position: chr28:3011197-3011063 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 5-156
Cow position: chr28:117690-117545 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 16, 49

Conread position: 5-156
Cow position: chr28:118682-118827 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 49

Conread position: 5-157
Cow position: chr28:8165143-8164998 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 141, 48

Conread position: 5-169
Cow position: chr28:13356298-13356138 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 93, 48

Conread position: 6-174
Cow position: chr28:9812347-9812516 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 15

Conread position: 8-176
Cow position: chr28:17620286-17620124 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 138, 45

Conread position: 8-176
Cow position: chr28:19128099-19127937 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 149, 45

Conread position: 12-159
Cow position: chr28:18761930-18761792 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 12-177
Cow position: chr28:16964887-16964729 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 134, 41

Conread position: 164-378
Cow position: chr28:10163194-10163411 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 37, 28

Conread position: 188-418
Cow position: chr28:978530-978292 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 125, 0

Conread position: 189-422
Cow position: chr28:11690193-11689960 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 12, 107

Conread position: 189-426
Cow position: chr28:25306993-25307232 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 49

Conread position: 196-414
Cow position: chr28:24330433-24330216 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 108, 186

Conread position: 196-422
Cow position: chr28:7595345-7595115 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 108, 46

Conread position: 196-422
Cow position: chr28:13179513-13179748 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 66, 17

Conread position: 196-422
Cow position: chr28:21941743-21941509 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 96, 207

Conread position: 196-422
Cow position: chr28:31415118-31414882 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 196-423
Cow position: chr28:7922841-7923070 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 48

Conread position: 196-425
Cow position: chr28:21118338-21118110 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 119, 36

Conread position: 196-433
Cow position: chr28:22242257-22242022 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 168, 55

Conread position: 196-439
Cow position: chr28:22202166-22202415 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 118, 83

Conread position: 196-455
Cow position: chr28:757250-756999 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 66

Conread position: 197-422
Cow position: chr28:25315216-25315437 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 112, 169

Conread position: 199-419
Cow position: chr28:31339342-31339113 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 70, 27

Conread position: 199-422
Cow position: chr28:2577324-2577551 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 6

Conread position: 201-423
Cow position: chr28:2641975-2642204 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 10, 19

Conread position: 207-422
Cow position: chr28:16613540-16613759 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 92, 128

Conread position: 210-422
Cow position: chr28:25498497-25498292 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 87, 54

Conread position: 213-424
Cow position: chr28:28438613-28438832 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 98, 0

Conread position: 225-442
Cow position: chr28:4404043-4404270 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 79, 15

Conread position: 226-398
Cow position: chr28:5158398-5158578 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 19

Conread position: 228-417
Cow position: chr28:1885344-1885538 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 33

Conread position: 230-355
Cow position: chr28:17333738-17333867 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 238-420
Cow position: chr28:4110917-4111101 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 64, 18

Conread position: 262-416
Cow position: chr28:15993651-15993809 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 49, 33

Show alignments to all cow chromosomes.