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Cow genome map

           
Conread name:
           
ruio20_a11.y1
        

               
Conread position:
               
279-512
               

               
Cow position:
               
chr21:2927378-2927129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
279-513
               

               
Cow position:
               
chr21:39401425-39401660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 20
               

               
Conread position:
               
281-513
               

               
Cow position:
               
chr21:5455157-5454926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
284-509
               

               
Cow position:
               
chr21:41455117-41454887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 190
               

               
Conread position:
               
286-506
               

               
Cow position:
               
chr21:19083763-19083540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
291-512
               

               
Cow position:
               
chr21:48176668-48176888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
296-507
               

               
Cow position:
               
chr21:6833897-6834109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
297-490
               

               
Cow position:
               
chr21:393868-394062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
297-504
               

               
Cow position:
               
chr21:22860848-22861058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
297-509
               

               
Cow position:
               
chr21:11456963-11456747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
297-510
               

               
Cow position:
               
chr21:47009395-47009173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 74
               

               
Conread position:
               
297-512
               

               
Cow position:
               
chr21:44515121-44515328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
297-515
               

               
Cow position:
               
chr21:17410813-17410591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 107
               

               
Conread position:
               
297-516
               

               
Cow position:
               
chr21:2785933-2785708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 112
               

               
Conread position:
               
298-456
               

               
Cow position:
               
chr21:46242392-46242228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
298-458
               

               
Cow position:
               
chr21:23683398-23683559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
298-459
               

               
Cow position:
               
chr21:4189682-4189848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
298-461
               

               
Cow position:
               
chr21:4080200-4080373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
298-461
               

               
Cow position:
               
chr21:42348830-42348660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr21:81918-82095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
58, 114
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr21:6765728-6765896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr21:12366235-12366398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
104, 136
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr21:27124279-27124110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr21:27624560-27624725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 13
               

               
Conread position:
               
298-463
               

               
Cow position:
               
chr21:35997021-35997190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
298-466
               

               
Cow position:
               
chr21:28512380-28512548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
114, 122
               

               
Conread position:
               
298-467
               

               
Cow position:
               
chr21:23478872-23478697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
298-467
               

               
Cow position:
               
chr21:34658882-34659054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
106, 76
               

               
Conread position:
               
298-468
               

               
Cow position:
               
chr21:13488367-13488543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
298-468
               

               
Cow position:
               
chr21:24094896-24094727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 34
               

               
Conread position:
               
298-468
               

               
Cow position:
               
chr21:29979908-29979737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
298-469
               

               
Cow position:
               
chr21:32237145-32237317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 76
               

               
Conread position:
               
298-469
               

               
Cow position:
               
chr21:33210046-33210224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
298-469
               

               
Cow position:
               
chr21:42463993-42463812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
298-469
               

               
Cow position:
               
chr21:45375463-45375644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
298-472
               

               
Cow position:
               
chr21:9998873-9998692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
298-472
               

               
Cow position:
               
chr21:46912389-46912565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
298-473
               

               
Cow position:
               
chr21:802446-802281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
298-473
               

               
Cow position:
               
chr21:10151642-10151824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
101, 77
               

               
Conread position:
               
298-473
               

               
Cow position:
               
chr21:34738446-34738636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
298-478
               

               
Cow position:
               
chr21:41597663-41597852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
298-479
               

               
Cow position:
               
chr21:28027651-28027838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 179
               

               
Conread position:
               
298-481
               

               
Cow position:
               
chr21:9278220-9278415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
298-483
               

               
Cow position:
               
chr21:48484596-48484411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
106, 45
               

               
Conread position:
               
298-487
               

               
Cow position:
               
chr21:8618122-8618320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
298-487
               

               
Cow position:
               
chr21:33791520-33791327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
298-489
               

               
Cow position:
               
chr21:15445231-15445031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
298-489
               

               
Cow position:
               
chr21:15867160-15867352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
298-490
               

               
Cow position:
               
chr21:28944516-28944321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
105, 131
               

               
Conread position:
               
298-491
               

               
Cow position:
               
chr21:37361620-37361430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
120, 62
               

               
Conread position:
               
298-491
               

               
Cow position:
               
chr21:41957326-41957132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
123, 45
               

               
Conread position:
               
298-491
               

               
Cow position:
               
chr21:42135776-42135576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
58, 111
               

               
Conread position:
               
298-495
               

               
Cow position:
               
chr21:28993778-28993575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 191
               

               
Conread position:
               
298-499
               

               
Cow position:
               
chr21:46829420-46829227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 56
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chr21:10608607-10608400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
104, 177
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr21:4998639-4998434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
86, 106
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr21:42190321-42190118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
298-502
               

               
Cow position:
               
chr21:1464076-1464284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 177
               

               
Conread position:
               
298-502
               

               
Cow position:
               
chr21:3763890-3763688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
298-502
               

               
Cow position:
               
chr21:27521480-27521278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
298-502
               

               
Cow position:
               
chr21:40058653-40058861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr21:12616987-12617195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr21:40244282-40244499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr21:33727613-33727407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
298-505
               

               
Cow position:
               
chr21:23606522-23606730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
298-506
               

               
Cow position:
               
chr21:10000928-10001134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
298-506
               

               
Cow position:
               
chr21:11645121-11644907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
298-506
               

               
Cow position:
               
chr21:40134004-40134216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
298-506
               

               
Cow position:
               
chr21:46264024-46264230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
298-507
               

               
Cow position:
               
chr21:44156-44365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 48
               

               
Conread position:
               
298-507
               

               
Cow position:
               
chr21:42500880-42501104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:641432-641649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:13048349-13048131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:13840170-13840389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:38449604-38449383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:40786518-40786740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 178
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:40899184-40899401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:41198563-41198337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:44114282-44114068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr21:45921211-45920996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 181
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:5636873-5636660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
53, 108
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:10882282-10882506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:12153983-12154194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
50, 131
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:19196319-19196101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 189
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:28429297-28429504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:34010543-34010332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
298-511
               

               
Cow position:
               
chr21:41620967-41621188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:912119-911902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 105
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:3361167-3360949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:7582062-7581841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
59, 109
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:7672980-7673187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
190, 58
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:8985397-8985616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 76
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:10514655-10514870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:12801899-12801685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
179, 105
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:15911248-15911467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:16612477-16612689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:18790708-18790497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:19363616-19363395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:21077178-21077390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:28881990-28882201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 50
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:29484831-29485046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:45850863-45850645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 102
               

               
Conread position:
               
298-512
               

               
Cow position:
               
chr21:46143791-46144023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:33569-33784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:1058924-1059144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
71, 216
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:1591396-1591619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:3381234-3381013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
91, 71
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:3813635-3813418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 185
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:4399647-4399868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:5137642-5137422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 164
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:9416090-9416315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:10118401-10118624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 221
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:13585212-13584994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:14760428-14760639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 45
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:15584562-15584354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:15976489-15976698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:19258674-19258887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 130
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:19977179-19977400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:23586724-23586947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:24642366-24642586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:24765131-24765348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:27743590-27743814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:28244323-28244536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:30150418-30150198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 135
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:30231854-30231629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 172
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:30849091-30848881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:31253384-31253602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 185
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:32535824-32536042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 88
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:33997374-33997162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
123, 50
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:34391123-34390910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:36756462-36756665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 39
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:37345254-37345035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 185
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:40589635-40589419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:41878324-41878536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:42145765-42145984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:44108855-44109068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:45971310-45971107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 57
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:46849275-46849062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:47764265-47764052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
298-513
               

               
Cow position:
               
chr21:47802412-47802194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
84, 105
               

               
Conread position:
               
298-514
               

               
Cow position:
               
chr21:10263888-10264099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:10633793-10633570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 219
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:13898036-13898255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:17412444-17412228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:20925659-20925437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 216
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:21216293-21216073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:21223137-21223353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:24796190-24795967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 79
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:25382857-25383091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
298-515
               

               
Cow position:
               
chr21:38918062-38918271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 126
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:395723-395936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:3236378-3236594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:3818064-3818277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
106, 45
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:4098723-4098941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:5596994-5597220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 194
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:5898550-5898333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:6910036-6909814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 190
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:9353288-9353515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:13128246-13128028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 143
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:13738416-13738628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:17174992-17175215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
48, 170
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:17643125-17642916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 112
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:18065076-18064846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
107, 154
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:18494813-18495040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
52, 109
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:18568802-18568571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:18934770-18934995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 57
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:23322236-23322010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 186
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:23499975-23499756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 79
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:23672591-23672817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:23801274-23801060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:28443530-28443305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:28734064-28733844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:28989460-28989678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:30607240-30607019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:31662308-31662535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:34565365-34565141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 109
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:34739694-34739912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
134, 104
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:36793740-36793963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:36795451-36795671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:38900622-38900842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:41579595-41579824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 164
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:41974531-41974306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:42384353-42384576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 190
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:42414255-42414030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
66, 108
               

               
Conread position:
               
298-516
               

               
Cow position:
               
chr21:45330760-45330535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
52, 187
               

               
Conread position:
               
299-457
               

               
Cow position:
               
chr21:24714501-24714667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
299-463
               

               
Cow position:
               
chr21:19937084-19936918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 80
               

               
Conread position:
               
299-499
               

               
Cow position:
               
chr21:17193911-17193700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
299-504
               

               
Cow position:
               
chr21:13035199-13034982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
299-504
               

               
Cow position:
               
chr21:39888895-39888693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
299-506
               

               
Cow position:
               
chr21:10823402-10823624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 193
               

               
Conread position:
               
299-506
               

               
Cow position:
               
chr21:22718932-22718724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 139
               

               
Conread position:
               
299-510
               

               
Cow position:
               
chr21:10007792-10007577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 152
               

               
Conread position:
               
299-510
               

               
Cow position:
               
chr21:33729283-33729492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
299-512
               

               
Cow position:
               
chr21:42913897-42913679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr21:5426792-5427005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr21:13713995-13713775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr21:24222689-24222472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr21:33562864-33563073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr21:39450320-39450096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
299-514
               

               
Cow position:
               
chr21:21169646-21169426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
299-516
               

               
Cow position:
               
chr21:49662268-49662053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
300-459
               

               
Cow position:
               
chr21:45151773-45151607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
300-494
               

               
Cow position:
               
chr21:46973276-46973086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chr21:8351455-8351255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
300-510
               

               
Cow position:
               
chr21:22856064-22856283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
51, 178
               

               
Conread position:
               
300-511
               

               
Cow position:
               
chr21:6764853-6764637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
300-511
               

               
Cow position:
               
chr21:18780123-18779908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
300-512
               

               
Cow position:
               
chr21:42841743-42841533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
300-513
               

               
Cow position:
               
chr21:10114479-10114265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 77
               

               
Conread position:
               
300-513
               

               
Cow position:
               
chr21:17455234-17455451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
300-513
               

               
Cow position:
               
chr21:28617440-28617656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
301-463
               

               
Cow position:
               
chr21:7564472-7564301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
301-506
               

               
Cow position:
               
chr21:5344506-5344725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
301-511
               

               
Cow position:
               
chr21:11639870-11640085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
301-512
               

               
Cow position:
               
chr21:18850368-18850162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
180, 48
               

               
Conread position:
               
301-512
               

               
Cow position:
               
chr21:33982958-33982743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 185
               

               
Conread position:
               
301-513
               

               
Cow position:
               
chr21:6713674-6713460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
301-513
               

               
Cow position:
               
chr21:32339886-32339675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
301-515
               

               
Cow position:
               
chr21:20160534-20160743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
302-492
               

               
Cow position:
               
chr21:48251178-48250982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
302-511
               

               
Cow position:
               
chr21:27863668-27863450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 154
               

               
Conread position:
               
302-513
               

               
Cow position:
               
chr21:35569521-35569319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
302-513
               

               
Cow position:
               
chr21:42905526-42905306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
302-513
               

               
Cow position:
               
chr21:45915853-45915649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
304-470
               

               
Cow position:
               
chr21:17434467-17434295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
304-506
               

               
Cow position:
               
chr21:16696222-16696426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 179
               

               
Conread position:
               
304-513
               

               
Cow position:
               
chr21:10005032-10004820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
304-513
               

               
Cow position:
               
chr21:10727134-10727342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
117, 54
               

               
Conread position:
               
304-516
               

               
Cow position:
               
chr21:18041989-18041779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
305-509
               

               
Cow position:
               
chr21:957521-957734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
305-512
               

               
Cow position:
               
chr21:27229940-27229727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
305-513
               

               
Cow position:
               
chr21:26648151-26647943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
306-463
               

               
Cow position:
               
chr21:7825320-7825161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 63
               

               
Conread position:
               
306-500
               

               
Cow position:
               
chr21:35354393-35354586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
306-510
               

               
Cow position:
               
chr21:28626094-28626304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
50, 65
               

               
Conread position:
               
306-512
               

               
Cow position:
               
chr21:18845162-18844948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
306-513
               

               
Cow position:
               
chr21:43357408-43357189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 160
               

               
Conread position:
               
306-516
               

               
Cow position:
               
chr21:8235689-8235487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 67
               

               
Conread position:
               
307-510
               

               
Cow position:
               
chr21:17183778-17183985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
307-512
               

               
Cow position:
               
chr21:23192661-23192448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
307-516
               

               
Cow position:
               
chr21:42007603-42007393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
309-516
               

               
Cow position:
               
chr21:29978903-29978692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
310-461
               

               
Cow position:
               
chr21:17637758-17637915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
310-513
               

               
Cow position:
               
chr21:11250725-11250938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 181
               

               
Conread position:
               
311-512
               

               
Cow position:
               
chr21:6102399-6102197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
312-491
               

               
Cow position:
               
chr21:19615033-19615221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
312-508
               

               
Cow position:
               
chr21:2293854-2294044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
312-513
               

               
Cow position:
               
chr21:28923978-28924174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
190, 60
               

               
Conread position:
               
312-516
               

               
Cow position:
               
chr21:11359899-11360104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
312-516
               

               
Cow position:
               
chr21:12462109-12461899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
313-509
               

               
Cow position:
               
chr21:45866794-45866995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
315-491
               

               
Cow position:
               
chr21:17875331-17875147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
315-504
               

               
Cow position:
               
chr21:20418825-20418626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
315-511
               

               
Cow position:
               
chr21:14452102-14452297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
315-511
               

               
Cow position:
               
chr21:34736895-34737093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
315-512
               

               
Cow position:
               
chr21:17856408-17856608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
315-513
               

               
Cow position:
               
chr21:39809764-39809959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
315-515
               

               
Cow position:
               
chr21:20152812-20153023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
318-486
               

               
Cow position:
               
chr21:7785093-7785268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
318-516
               

               
Cow position:
               
chr21:37886278-37886480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr21:34151450-34151649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
322-502
               

               
Cow position:
               
chr21:20192774-20192951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
324-472
               

               
Cow position:
               
chr21:27810278-27810433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
325-465
               

               
Cow position:
               
chr21:949794-949657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
327-516
               

               
Cow position:
               
chr21:18414926-18415121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
6, 188
               

               
Conread position:
               
328-513
               

               
Cow position:
               
chr21:36789671-36789860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
331-511
               

               
Cow position:
               
chr21:2260473-2260301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
333-511
               

               
Cow position:
               
chr21:40168752-40168562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
333-516
               

               
Cow position:
               
chr21:4568168-4568353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 70
               

               
Conread position:
               
335-511
               

               
Cow position:
               
chr21:25629027-25628847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
338-507
               

               
Cow position:
               
chr21:34722897-34722728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 5
               

               
Conread position:
               
340-491
               

               
Cow position:
               
chr21:46469859-46470014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
340-511
               

               
Cow position:
               
chr21:10410103-10410287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 171
               

               
Conread position:
               
340-511
               

               
Cow position:
               
chr21:23980292-23980119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 134
               

               
Conread position:
               
341-513
               

               
Cow position:
               
chr21:9980073-9979905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
342-512
               

               
Cow position:
               
chr21:10673023-10673185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
343-506
               

               
Cow position:
               
chr21:21143794-21143960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
343-511
               

               
Cow position:
               
chr21:16481550-16481380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 141
               

               
Conread position:
               
346-516
               

               
Cow position:
               
chr21:29224966-29224792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 136
               

               
Conread position:
               
347-512
               

               
Cow position:
               
chr21:10561687-10561519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
347-516
               

               
Cow position:
               
chr21:8206669-8206840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
349-516
               

               
Cow position:
               
chr21:41514703-41514877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
353-510
               

               
Cow position:
               
chr21:17008884-17009043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 118
               

               
Conread position:
               
353-516
               

               
Cow position:
               
chr21:9940292-9940120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
354-510
               

               
Cow position:
               
chr21:22121426-22121572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
355-512
               

               
Cow position:
               
chr21:47363834-47363672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
356-513
               

               
Cow position:
               
chr21:47714101-47713939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
357-516
               

               
Cow position:
               
chr21:22210338-22210178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 126
               

               
Conread position:
               
360-463
               

               
Cow position:
               
chr21:15200714-15200819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
362-512
               

               
Cow position:
               
chr21:30835274-30835430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
362-514
               

               
Cow position:
               
chr21:6997850-6998006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 123
               

               
Conread position:
               
369-516
               

               
Cow position:
               
chr21:37014484-37014338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
370-516
               

               
Cow position:
               
chr21:40432368-40432513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
375-516
               

               
Cow position:
               
chr21:33360109-33359966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
375-516
               

               
Cow position:
               
chr21:46552181-46552035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
378-513
               

               
Cow position:
               
chr21:40266049-40266190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
378-516
               

               
Cow position:
               
chr21:1511219-1511361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
382-511
               

               
Cow position:
               
chr21:19210646-19210777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
400-513
               

               
Cow position:
               
chr21:28919575-28919458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
417-515
               

               
Cow position:
               
chr21:17890273-17890369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               
Show alignments to all cow chromosomes.