Cow genome map

Conread name: ruio32_f18.y1

Conread position: 1-510
Cow position: chr14:25794655-25794147 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 32

Conread position: 1-612
Cow position: chr14:25784375-25784973 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 355

Conread position: 1-632
Cow position: chr14:25795411-25794780 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 1-636
Cow position: chr14:25795075-25794440 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 45

Conread position: 1-637
Cow position: chr14:25783451-25784087 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 21

Conread position: 1-637
Cow position: chr14:25783619-25784255 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 113

Conread position: 1-637
Cow position: chr14:25783787-25784423 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 449

Conread position: 1-638
Cow position: chr14:25783367-25784004 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 1-638
Cow position: chr14:25783535-25784172 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 1-638
Cow position: chr14:25783703-25784340 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 35

Conread position: 1-638
Cow position: chr14:25784039-25784676 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 366

Conread position: 1-638
Cow position: chr14:25794823-25794185 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 35

Conread position: 1-638
Cow position: chr14:25794991-25794354 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 39

Conread position: 1-638
Cow position: chr14:25795327-25794690 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 370

Conread position: 2-599
Cow position: chr14:25795158-25794561 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 368

Conread position: 2-618
Cow position: chr14:25859544-25860160 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 381
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 112

Conread position: 13-598
Cow position: chr14:25783295-25783880 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 101

Conread position: 32-638
Cow position: chr14:25783902-25784508 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 87

Conread position: 35-404
Cow position: chr14:3155466-3155835 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 222
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 168, 164

Conread position: 35-484
Cow position: chr14:3156039-3156488 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 291
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 64, 78

Conread position: 35-608
Cow position: chr14:3101362-3100795 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 354
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 23

Conread position: 35-637
Cow position: chr14:25795209-25794607 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 494

Conread position: 35-638
Cow position: chr14:25795461-25794858 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 160

Conread position: 39-476
Cow position: chr14:3127710-3127272 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 270
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 245

Conread position: 39-566
Cow position: chr14:3100777-3100240 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 341
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 7, 71

Conread position: 39-599
Cow position: chr14:25784329-25784883 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 75

Conread position: 39-605
Cow position: chr14:25783993-25784559 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 75

Conread position: 41-607
Cow position: chr14:25876970-25877536 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 68

Conread position: 41-638
Cow position: chr14:3155877-3156474 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 65

Conread position: 43-605
Cow position: chr14:25910733-25911290 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 357
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 56, 8

Conread position: 45-347
Cow position: chr14:3080023-3079721 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 186
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 60

Conread position: 45-485
Cow position: chr14:25836786-25837226 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 272
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 322, 305

Conread position: 45-501
Cow position: chr14:25877394-25877850 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 288
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 93, 77

Conread position: 45-605
Cow position: chr14:25859335-25859895 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 158

Conread position: 45-606
Cow position: chr14:25859251-25859812 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 62

Conread position: 45-608
Cow position: chr14:25836198-25836761 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 317

Conread position: 45-618
Cow position: chr14:25876638-25877211 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 406

Conread position: 45-624
Cow position: chr14:25876890-25877469 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 158

Conread position: 45-625
Cow position: chr14:25836114-25836694 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 45-638
Cow position: chr14:25836450-25837043 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 69

Conread position: 46-444
Cow position: chr14:25877479-25877877 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 245
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 59

Conread position: 46-636
Cow position: chr14:3080694-3080104 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 352
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 82, 60

Conread position: 46-637
Cow position: chr14:3080526-3079935 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 353
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 79, 65

Conread position: 49-600
Cow position: chr14:25860263-25860809 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 337
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 301, 315

Conread position: 49-607
Cow position: chr14:25784171-25784729 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 65

Conread position: 49-624
Cow position: chr14:25859843-25860418 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 58

Conread position: 51-423
Cow position: chr14:25794521-25794145 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 139

Conread position: 52-608
Cow position: chr14:25860182-25860738 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 348
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 55, 61

Conread position: 52-636
Cow position: chr14:447663-448247 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 351
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 54, 61

Conread position: 62-638
Cow position: chr14:3101003-3100429 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 344
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 66, 53

Conread position: 64-486
Cow position: chr14:3080088-3079666 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 262
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 64-488
Cow position: chr14:3155411-3155835 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 274
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 223, 219

Conread position: 64-517
Cow position: chr14:25836721-25837174 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 64-523
Cow position: chr14:3100835-3100375 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 290
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 59

Conread position: 64-567
Cow position: chr14:3155984-3156487 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 43

Conread position: 64-599
Cow position: chr14:25836385-25836920 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 50

Conread position: 64-608
Cow position: chr14:25835797-25836341 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 337
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 58

Conread position: 64-608
Cow position: chr14:25859774-25860318 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 136

Conread position: 64-608
Cow position: chr14:25876825-25877369 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 472

Conread position: 64-618
Cow position: chr14:25860110-25860664 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 397

Conread position: 64-618
Cow position: chr14:25877161-25877715 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 397

Conread position: 64-625
Cow position: chr14:25859690-25860251 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 64-637
Cow position: chr14:3080424-3079851 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 345
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 42, 62

Conread position: 64-638
Cow position: chr14:3127852-3127278 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 285

Conread position: 64-638
Cow position: chr14:25836049-25836623 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 192

Conread position: 66-623
Cow position: chr14:25835715-25836272 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 333
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 194, 179

Conread position: 69-638
Cow position: chr14:25859191-25859760 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 342
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 51, 35

Conread position: 88-517
Cow position: chr14:680837-681266 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 264
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 34, 22

Conread position: 88-608
Cow position: chr14:25876513-25877033 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 26

Conread position: 88-638
Cow position: chr14:25895476-25896026 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 341
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 41, 34

Conread position: 108-635
Cow position: chr14:25783306-25783833 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 342

Conread position: 113-624
Cow position: chr14:25876454-25876965 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 428, 411

Conread position: 113-625
Cow position: chr14:25859571-25860083 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 339

Conread position: 118-637
Cow position: chr14:25795462-25794943 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-326
Cow position: chr14:3156536-3156741 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 124-521
Cow position: chr14:3155387-3155784 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 246

Conread position: 127-515
Cow position: chr14:25895095-25895483 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 233
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 65, 74

Conread position: 127-637
Cow position: chr14:680708-681218 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 311
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 163, 156

Conread position: 127-638
Cow position: chr14:25895767-25896278 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 306
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 76, 63

Conread position: 132-439
Cow position: chr14:25784986-25785282 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 202
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 57

Conread position: 137-607
Cow position: chr14:680634-681104 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 230, 213

Conread position: 137-638
Cow position: chr14:25895609-25896110 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 309
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 233, 218

Conread position: 138-638
Cow position: chr14:3080854-3080354 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 313
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 66, 61

Conread position: 140-638
Cow position: chr14:25876311-25876811 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 306
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 225

Conread position: 143-521
Cow position: chr14:680220-680598 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 222
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 148-636
Cow position: chr14:680309-680797 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 289
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 318, 325

Conread position: 202-638
Cow position: chr14:3080958-3080522 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 266
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 59

Conread position: 207-638
Cow position: chr14:3155875-3156306 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 272
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 210-636
Cow position: chr14:3155389-3155815 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 274
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 316, 325

Conread position: 211-600
Cow position: chr14:3101438-3101050 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 241
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 376, 105

Conread position: 216-403
Cow position: chr14:3156547-3156734 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 140, 154

Conread position: 286-637
Cow position: chr14:25783316-25783667 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 160

Conread position: 295-636
Cow position: chr14:3101438-3101098 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 214
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 67

Conread position: 378-638
Cow position: chr14:25783324-25783584 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 141, 152

Show alignments to all cow chromosomes.