Cow genome map

Conread name: ruio32_f18.y1

Conread position: 1-320
Cow position: chr22:12475611-12475292 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 118, 106

Conread position: 1-432
Cow position: chr22:11666469-11666901 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 278
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 126, 104

Conread position: 1-489
Cow position: chr22:12458250-12457762 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 122

Conread position: 1-561
Cow position: chr22:11701123-11701683 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 31

Conread position: 1-566
Cow position: chr22:12475863-12475298 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 182

Conread position: 1-600
Cow position: chr22:12499228-12499828 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 10

Conread position: 1-632
Cow position: chr22:12399486-12398855 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 32

Conread position: 1-632
Cow position: chr22:12399654-12399023 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-637
Cow position: chr22:12431298-12430662 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 343

Conread position: 1-638
Cow position: chr22:12399822-12399185 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 113

Conread position: 7-480
Cow position: chr22:12431039-12430567 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 299
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 278, 25

Conread position: 7-638
Cow position: chr22:12458579-12457949 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 12

Conread position: 35-398
Cow position: chr22:12385274-12384911 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 239
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 35-405
Cow position: chr22:12399116-12398745 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 247

Conread position: 35-599
Cow position: chr22:12385612-12385046 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 35-638
Cow position: chr22:12399704-12399101 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 245

Conread position: 35-638
Cow position: chr22:12458384-12457781 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 232

Conread position: 37-409
Cow position: chr22:12499600-12499972 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 319

Conread position: 37-485
Cow position: chr22:12399198-12398750 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 82

Conread position: 38-637
Cow position: chr22:12399365-12398766 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 145

Conread position: 39-409
Cow position: chr22:12475657-12475287 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 160

Conread position: 39-636
Cow position: chr22:12476243-12475648 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 10

Conread position: 39-636
Cow position: chr22:12499016-12499611 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 39-636
Cow position: chr22:12499098-12499695 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 151

Conread position: 39-638
Cow position: chr22:12476161-12475562 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 151

Conread position: 42-600
Cow position: chr22:12498933-12499492 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 302

Conread position: 42-607
Cow position: chr22:12431341-12430776 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 42-608
Cow position: chr22:14467954-14468520 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 346
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 155, 141

Conread position: 42-621
Cow position: chr22:14430297-14430876 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 73

Conread position: 42-624
Cow position: chr22:12431173-12430591 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 81

Conread position: 42-638
Cow position: chr22:12385689-12385091 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 42-638
Cow position: chr22:12431593-12430997 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 62

Conread position: 42-638
Cow position: chr22:12432181-12431585 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 141

Conread position: 42-638
Cow position: chr22:12476410-12475814 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 481, 489

Conread position: 42-638
Cow position: chr22:12498849-12499445 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 63

Conread position: 42-638
Cow position: chr22:14441939-14442535 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 343
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 135, 155

Conread position: 45-408
Cow position: chr22:11641092-11641455 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 234
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 83

Conread position: 45-416
Cow position: chr22:12418877-12418506 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 235
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 305, 325

Conread position: 45-565
Cow position: chr22:12458290-12457770 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 45-575
Cow position: chr22:11640924-11641454 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 60

Conread position: 45-599
Cow position: chr22:12476323-12475769 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 311

Conread position: 45-608
Cow position: chr22:12431674-12431111 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 239

Conread position: 45-636
Cow position: chr22:12475903-12475312 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 45-636
Cow position: chr22:12499356-12499947 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 144

Conread position: 45-637
Cow position: chr22:11640840-11641432 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 323

Conread position: 45-638
Cow position: chr22:11640672-11641265 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 14

Conread position: 45-638
Cow position: chr22:12399526-12398933 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 137

Conread position: 45-638
Cow position: chr22:12432262-12431669 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 64

Conread position: 46-501
Cow position: chr22:12418960-12418505 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 228

Conread position: 46-599
Cow position: chr22:12432009-12431456 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 137

Conread position: 46-638
Cow position: chr22:12499189-12499781 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 58

Conread position: 49-522
Cow position: chr22:14430556-14431022 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 299
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 54, 61

Conread position: 49-599
Cow position: chr22:14429716-14430266 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 70

Conread position: 49-599
Cow position: chr22:14429800-14430350 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 151

Conread position: 49-599
Cow position: chr22:14429884-14430434 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 58

Conread position: 49-605
Cow position: chr22:12431502-12430945 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 61

Conread position: 49-636
Cow position: chr22:12458622-12458035 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 499, 494

Conread position: 49-638
Cow position: chr22:12431754-12431165 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 134

Conread position: 49-638
Cow position: chr22:12432426-12431837 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 157

Conread position: 50-488
Cow position: chr22:12475730-12475292 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 233

Conread position: 50-488
Cow position: chr22:12499529-12499967 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 50-638
Cow position: chr22:12432341-12431753 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 72

Conread position: 52-489
Cow position: chr22:46654422-46654860 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 263
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 63

Conread position: 52-637
Cow position: chr22:46654002-46654587 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 53

Conread position: 53-638
Cow position: chr22:12475979-12475394 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 137

Conread position: 64-320
Cow position: chr22:11701438-11701694 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 42

Conread position: 64-485
Cow position: chr22:12385329-12384908 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 271
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 132, 125

Conread position: 64-520
Cow position: chr22:46654350-46654807 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 283
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 186, 190

Conread position: 64-599
Cow position: chr22:14429983-14430518 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 64-638
Cow position: chr22:12431403-12430829 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 52

Conread position: 66-596
Cow position: chr22:12419024-12418494 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 289

Conread position: 66-636
Cow position: chr22:12399841-12399271 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 48

Conread position: 73-638
Cow position: chr22:11640616-11641181 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 88-632
Cow position: chr22:12458415-12457871 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 271

Conread position: 115-599
Cow position: chr22:12432444-12431960 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 85

Conread position: 120-599
Cow position: chr22:12458635-12458156 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 249

Conread position: 123-638
Cow position: chr22:12419320-12418788 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 305
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 224, 0

Conread position: 127-636
Cow position: chr22:11640838-11641347 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 134-636
Cow position: chr22:12476484-12475984 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 10

Conread position: 137-638
Cow position: chr22:12399930-12399437 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 11

Conread position: 141-620
Cow position: chr22:14429640-14430119 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 307
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 288, 296

Conread position: 142-599
Cow position: chr22:12399849-12399392 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 225

Conread position: 149-638
Cow position: chr22:12432494-12432005 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 18

Conread position: 151-638
Cow position: chr22:12419023-12418536 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 216

Conread position: 156-638
Cow position: chr22:11640615-11641097 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 199

Conread position: 195-638
Cow position: chr22:12385704-12385259 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 171

Conread position: 209-636
Cow position: chr22:12498848-12499275 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 177

Conread position: 212-638
Cow position: chr22:11666428-11666854 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 145

Conread position: 212-638
Cow position: chr22:12458627-12458201 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 157

Conread position: 216-633
Cow position: chr22:14468044-14468461 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 271
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 248, 242

Conread position: 240-636
Cow position: chr22:11701110-11701506 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 266
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 139, 109

Conread position: 290-521
Cow position: chr22:12419321-12419090 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 59, 89

Conread position: 292-638
Cow position: chr22:12476412-12476066 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 218
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 310-521
Cow position: chr22:12545641-12545852 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 46

Conread position: 330-638
Cow position: chr22:11701116-11701424 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 194
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 133, 120

Show alignments to all cow chromosomes.