Cow genome map
| Conread name: | ruio32_f18.y1 |
| Conread position: | 1-322 |
| Cow position: | chr23:24654055-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-324 |
| Cow position: | chr23:24560448-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 202, 182 |
| Conread position: | 1-352 |
| Cow position: | chr23:24522546-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 1-419 |
| Cow position: | chr23:24626330-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 343 |
| Conread position: | 1-490 |
| Cow position: | chr23:25660257-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 311 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 118, 102 |
| Conread position: | 1-637 |
| Cow position: | chr23:24547308-24546672 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-638 |
| Cow position: | chr23:25625968-25626602 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-638 |
| Cow position: | chr23:25626304-25626938 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 282 |
| Conread position: | 1-638 |
| Cow position: | chr23:25724105-25723471 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 105 |
| Conread position: | 2-488 |
| Cow position: | chr23:24535938-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-487 |
| Cow position: | chr23:24560525-24560044 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 7 |
| Conread position: | 7-554 |
| Cow position: | chr23:24560609-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 7 |
| Conread position: | 8-636 |
| Cow position: | chr23:24639414-24640041 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 23-440 |
| Cow position: | chr23:24522608-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 35-387 |
| Cow position: | chr23:25698432-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 311, 336 |
| Conread position: | 35-501 |
| Cow position: | chr23:24639608-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-637 |
| Cow position: | chr23:25626422-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 35-638 |
| Cow position: | chr23:25698684-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 70 |
| Conread position: | 38-636 |
| Cow position: | chr23:24522758-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 42-247 |
| Cow position: | chr23:24654180-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-324 |
| Cow position: | chr23:25626762-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 42-476 |
| Cow position: | chr23:24547099-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-638 |
| Cow position: | chr23:24639279-24639875 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 147 |
| Conread position: | 46-354 |
| Cow position: | chr23:24639787-24640094 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 150, 137 |
| Conread position: | 46-571 |
| Cow position: | chr23:25660218-25660745 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 137 |
| Conread position: | 46-638 |
| Cow position: | chr23:24560655-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 310 |
| Conread position: | 47-561 |
| Cow position: | chr23:24547178-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-572 |
| Cow position: | chr23:24535975-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 328 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 141 |
| Conread position: | 49-638 |
| Cow position: | chr23:24560820-24560231 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 64-576 |
| Cow position: | chr23:25626535-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 46 |
| Conread position: | 64-592 |
| Cow position: | chr23:24639553-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 66-507 |
| Cow position: | chr23:24626312-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 66-638 |
| Cow position: | chr23:24560719-24560147 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 301 |
| Conread position: | 69-347 |
| Cow position: | chr23:24521972-24521694 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 201, 244 |
| Conread position: | 72-475 |
| Cow position: | chr23:24654042-24654444 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 74-638 |
| Cow position: | chr23:24560879-24560315 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 457 |
| Conread position: | 88-621 |
| Cow position: | chr23:25660176-25660710 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 193 |
| Conread position: | 88-638 |
| Cow position: | chr23:24639241-24639791 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 113-590 |
| Cow position: | chr23:24626274-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 234 |
| Conread position: | 118-586 |
| Cow position: | chr23:25698685-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 118-636 |
| Cow position: | chr23:25626001-25626519 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 406 |
| Conread position: | 118-638 |
| Cow position: | chr23:24547275-24546755 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-638 |
| Cow position: | chr23:24639193-24639707 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 196 |
| Conread position: | 126-638 |
| Cow position: | chr23:24535982-24535470 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-638 |
| Cow position: | chr23:24560905-24560399 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 141-638 |
| Cow position: | chr23:25660145-25660642 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 145-638 |
| Cow position: | chr23:24547332-24546839 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 149-499 |
| Cow position: | chr23:24654034-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 113 |
| Conread position: | 151-638 |
| Cow position: | chr23:24536041-24535554 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 205 |
| Conread position: | 197-638 |
| Cow position: | chr23:24626274-24626715 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 240-638 |
| Cow position: | chr23:24654042-24654439 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 286-608 |
| Cow position: | chr23:25698685-25698363 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 293-638 |
| Cow position: | chr23:24522755-24522413 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 183, 145 |
| Conread position: | 295-638 |
| Cow position: | chr23:24560910-24560567 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 301, 310 |
| Conread position: | 325-638 |
| Cow position: | chr23:24654043-24654356 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 115, 108 |
| Conread position: | 370-638 |
| Cow position: | chr23:25698685-25698417 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 415-638 |
| Cow position: | chr23:25724111-25723888 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.