Cow genome map
| Conread name: | ruio32_f18.y1 |
| Conread position: | 1-468 |
| Cow position: | chr25:34714055-34714522 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 210, 206 |
| Conread position: | 1-638 |
| Cow position: | chr25:33157452-33156815 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 370 |
| Conread position: | 2-632 |
| Cow position: | chr25:34447296-34447915 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 407 |
| Conread position: | 3-634 |
| Cow position: | chr25:34447045-34447676 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 7-433 |
| Cow position: | chr25:33299431-33299852 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 190, 18 |
| Conread position: | 7-453 |
| Cow position: | chr25:34769676-34769231 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 12 |
| Conread position: | 7-565 |
| Cow position: | chr25:33144877-33145431 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 14-637 |
| Cow position: | chr25:36800666-36801288 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 18 |
| Conread position: | 22-348 |
| Cow position: | chr25:18642212-18641883 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 154, 10 |
| Conread position: | 32-638 |
| Cow position: | chr25:34447240-34447839 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 463 |
| Conread position: | 35-486 |
| Cow position: | chr25:33127773-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-517 |
| Cow position: | chr25:34433579-34434052 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 192, 24 |
| Conread position: | 35-560 |
| Cow position: | chr25:23420354-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 35-595 |
| Cow position: | chr25:33157334-33156775 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 35-637 |
| Cow position: | chr25:34769901-34769299 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 35-638 |
| Cow position: | chr25:34770069-34769466 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 37-515 |
| Cow position: | chr25:33305907-33305434 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 39-623 |
| Cow position: | chr25:34769982-34769397 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 151 |
| Conread position: | 39-638 |
| Cow position: | chr25:33298790-33299389 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 327 |
| Conread position: | 39-638 |
| Cow position: | chr25:34763056-34763649 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 349 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 41-638 |
| Cow position: | chr25:326474-327077 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 165, 171 |
| Conread position: | 42-563 |
| Cow position: | chr25:33299297-33299818 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 43-599 |
| Cow position: | chr25:36801354-36801910 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 159 |
| Conread position: | 44-638 |
| Cow position: | chr25:36800443-36801037 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 45-632 |
| Cow position: | chr25:23420211-23420783 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 45-638 |
| Cow position: | chr25:33157492-33156899 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 45-638 |
| Cow position: | chr25:33305817-33305249 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 387 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 46-320 |
| Cow position: | chr25:34769470-34769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 253, 258 |
| Conread position: | 46-354 |
| Cow position: | chr25:22235979-22236286 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 298, 0 |
| Conread position: | 46-605 |
| Cow position: | chr25:33298881-33299440 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 403 |
| Conread position: | 46-605 |
| Cow position: | chr25:33305418-33304867 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 13 |
| Conread position: | 46-632 |
| Cow position: | chr25:34769806-34769220 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 46-638 |
| Cow position: | chr25:33298965-33299557 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 47-493 |
| Cow position: | chr25:326816-327268 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 162 |
| Conread position: | 49-263 |
| Cow position: | chr25:34433005-34433219 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 49-515 |
| Cow position: | chr25:36800868-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 306, 317 |
| Conread position: | 49-520 |
| Cow position: | chr25:33299388-33299855 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 50-638 |
| Cow position: | chr25:34762899-34763481 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 345 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 245, 202 |
| Conread position: | 61-635 |
| Cow position: | chr25:34770128-34769553 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 307 |
| Conread position: | 64-318 |
| Cow position: | chr25:33145182-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-347 |
| Cow position: | chr25:366725-367008 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-418 |
| Cow position: | chr25:33127886-33128240 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-476 |
| Cow position: | chr25:36801543-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 283, 302 |
| Conread position: | 64-521 |
| Cow position: | chr25:22235829-22236286 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 64-599 |
| Cow position: | chr25:33299235-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 64-605 |
| Cow position: | chr25:33299067-33299608 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 64-637 |
| Cow position: | chr25:34447022-34447595 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 474, 459 |
| Conread position: | 64-638 |
| Cow position: | chr25:33298647-33299221 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 64-638 |
| Cow position: | chr25:34762829-34763400 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 465, 303 |
| Conread position: | 65-563 |
| Cow position: | chr25:34714035-34714533 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 120, 113 |
| Conread position: | 66-632 |
| Cow position: | chr25:34713868-34714434 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 342 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 67-605 |
| Cow position: | chr25:33298566-33299104 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 135 |
| Conread position: | 70-486 |
| Cow position: | chr25:33145023-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 76-637 |
| Cow position: | chr25:33306286-33305729 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 196, 95 |
| Conread position: | 87-638 |
| Cow position: | chr25:33157533-33156983 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 88-476 |
| Cow position: | chr25:346472-346860 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-562 |
| Cow position: | chr25:33127742-33128216 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-638 |
| Cow position: | chr25:34446962-34447512 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 432 |
| Conread position: | 113-638 |
| Cow position: | chr25:34713831-34714356 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 143, 139 |
| Conread position: | 118-635 |
| Cow position: | chr25:23420353-23420870 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 246 |
| Conread position: | 123-392 |
| Cow position: | chr25:34763470-34763739 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-638 |
| Cow position: | chr25:34770149-34769634 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 138-637 |
| Cow position: | chr25:33298469-33298968 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 139-638 |
| Cow position: | chr25:23420055-23420537 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 117, 21 |
| Conread position: | 144-638 |
| Cow position: | chr25:34446934-34447428 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 308 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 148-477 |
| Cow position: | chr25:366725-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-638 |
| Cow position: | chr25:33127728-33128208 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 160-502 |
| Cow position: | chr25:346460-346802 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 213, 189 |
| Conread position: | 169-638 |
| Cow position: | chr25:36800652-36801121 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 186, 200 |
| Conread position: | 172-599 |
| Cow position: | chr25:326353-326780 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 198, 184 |
| Conread position: | 195-518 |
| Cow position: | chr25:18642208-18641882 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 195-638 |
| Cow position: | chr25:34770161-34769718 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 196-427 |
| Cow position: | chr25:34432984-34433215 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 221-636 |
| Cow position: | chr25:34446927-34447342 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 320, 304 |
| Conread position: | 229-638 |
| Cow position: | chr25:33144846-33145252 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 172, 165 |
| Conread position: | 233-574 |
| Cow position: | chr25:326924-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 114, 130 |
| Conread position: | 254-638 |
| Cow position: | chr25:23420321-23420705 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-638 |
| Cow position: | chr25:34446889-34447260 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 279-523 |
| Cow position: | chr25:34432983-34433227 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 161, 149 |
| Conread position: | 280-596 |
| Cow position: | chr25:18642207-18641888 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 89 |
| Conread position: | 307-638 |
| Cow position: | chr25:33298470-33298801 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 316-638 |
| Cow position: | chr25:366725-367047 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 199, 226 |
| Conread position: | 361-626 |
| Cow position: | chr25:18642210-18641942 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 102 |
| Conread position: | 389-636 |
| Cow position: | chr25:33127707-33127954 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.