Cow genome map
| Conread name: | ruio32_f18.y1 |
| Conread position: | 1-353 |
| Cow position: | chr28:34679455-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 1-405 |
| Cow position: | chr28:7758429-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 255, 251 |
| Conread position: | 1-562 |
| Cow position: | chr28:7757773-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 181 |
| Conread position: | 1-562 |
| Cow position: | chr28:9253040-9253601 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-588 |
| Cow position: | chr28:7810369-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 1-638 |
| Cow position: | chr28:7757437-7758074 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 280 |
| Conread position: | 1-638 |
| Cow position: | chr28:7757521-7758158 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-638 |
| Cow position: | chr28:9252956-9253593 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 514, 535 |
| Conread position: | 2-638 |
| Cow position: | chr28:11334031-11333401 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 391 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 3-638 |
| Cow position: | chr28:7757691-7758326 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 278 |
| Conread position: | 30-518 |
| Cow position: | chr28:9290138-9290620 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 30-584 |
| Cow position: | chr28:11334087-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 37-324 |
| Cow position: | chr28:9253328-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-509 |
| Cow position: | chr28:9290227-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 37-638 |
| Cow position: | chr28:9298707-9299291 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 373 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 561, 107 |
| Conread position: | 39-322 |
| Cow position: | chr28:9299280-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 153, 139 |
| Conread position: | 41-599 |
| Cow position: | chr28:9290065-9290617 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 42-353 |
| Cow position: | chr28:9299367-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 42-395 |
| Cow position: | chr28:9253249-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 42-560 |
| Cow position: | chr28:9299045-9299549 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 140 |
| Conread position: | 42-599 |
| Cow position: | chr28:7810326-7810874 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 43-599 |
| Cow position: | chr28:7757395-7757951 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 45-489 |
| Cow position: | chr28:9253168-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-521 |
| Cow position: | chr28:7758389-7758865 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 304 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 49-638 |
| Cow position: | chr28:11334152-11333563 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 208 |
| Conread position: | 52-348 |
| Cow position: | chr28:33210300-33210597 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 61-638 |
| Cow position: | chr28:9298981-9299543 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 46 |
| Conread position: | 62-638 |
| Cow position: | chr28:9298565-9299137 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 102 |
| Conread position: | 63-455 |
| Cow position: | chr28:33210227-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 64-515 |
| Cow position: | chr28:9299221-9299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 114 |
| Conread position: | 64-638 |
| Cow position: | chr28:7757254-7757822 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 67 |
| Conread position: | 64-638 |
| Cow position: | chr28:9289918-9290488 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 364 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 66-638 |
| Cow position: | chr28:9252937-9253509 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 463 |
| Conread position: | 67-637 |
| Cow position: | chr28:7757335-7757905 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 71-599 |
| Cow position: | chr28:34673362-34673890 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 203, 213 |
| Conread position: | 74-638 |
| Cow position: | chr28:7758334-7758898 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 292 |
| Conread position: | 88-638 |
| Cow position: | chr28:7810288-7810829 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 107 |
| Conread position: | 127-623 |
| Cow position: | chr28:34695891-34696387 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 73 |
| Conread position: | 132-599 |
| Cow position: | chr28:11334153-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 240 |
| Conread position: | 132-638 |
| Cow position: | chr28:9252588-9253089 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 356, 152 |
| Conread position: | 145-515 |
| Cow position: | chr28:33210225-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 219, 224 |
| Conread position: | 168-600 |
| Cow position: | chr28:34673375-34673807 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 260, 268 |
| Conread position: | 194-608 |
| Cow position: | chr28:34679596-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 90, 50 |
| Conread position: | 211-608 |
| Cow position: | chr28:11334242-11333845 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 215-638 |
| Cow position: | chr28:11334154-11333731 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 233-608 |
| Cow position: | chr28:34695829-34696204 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 138 |
| Conread position: | 295-632 |
| Cow position: | chr28:34679579-34679241 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 315-638 |
| Cow position: | chr28:33210227-33210550 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 371-638 |
| Cow position: | chr28:7810244-7810502 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 144, 47 |
| Conread position: | 424-638 |
| Cow position: | chr28:11334195-11333983 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 190, 21 |
Show alignments to all cow chromosomes.