Cow genome map

Conread name: uFN-UNL-P-FN-cm-g-03-0-UNL.s1

Conread position: 360-575
Cow position: chrX:13893127-13892919 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 80, 50

Conread position: 411-578
Cow position: chrX:41215592-41215421 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 18

Conread position: 418-578
Cow position: chrX:34565548-34565383 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 90, 40

Conread position: 430-578
Cow position: chrX:10251949-10252101 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 434-578
Cow position: chrX:26979542-26979692 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 56

Conread position: 439-578
Cow position: chrX:42492278-42492424 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 67, 128

Conread position: 440-573
Cow position: chrX:38726900-38727034 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 83

Conread position: 440-575
Cow position: chrX:16555980-16556116 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 7, 84

Conread position: 440-580
Cow position: chrX:37751869-37752009 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 77

Conread position: 441-571
Cow position: chrX:42461386-42461516 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 81

Conread position: 441-578
Cow position: chrX:33654602-33654745 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 443-578
Cow position: chrX:11654005-11653869 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 15

Conread position: 443-578
Cow position: chrX:40685090-40685229 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 444-584
Cow position: chrX:25815661-25815808 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 64, 124

Conread position: 445-578
Cow position: chrX:1122311-1122448 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 64, 7

Conread position: 445-578
Cow position: chrX:4559971-4559832 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 446-570
Cow position: chrX:42449776-42449907 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 446-585
Cow position: chrX:42894156-42894018 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 86, 11

Conread position: 447-573
Cow position: chrX:17524148-17524279 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 61, 126

Conread position: 447-577
Cow position: chrX:41790192-41790328 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 131

Conread position: 448-566
Cow position: chrX:37867488-37867364 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 448-568
Cow position: chrX:11670921-11670795 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 448-568
Cow position: chrX:28068085-28067959 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 448-570
Cow position: chrX:11454408-11454288 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 448-570
Cow position: chrX:12290952-12290826 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 448-570
Cow position: chrX:46910042-46909922 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 40

Conread position: 448-575
Cow position: chrX:11589133-11589265 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 448-575
Cow position: chrX:19018595-19018729 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 10

Conread position: 448-575
Cow position: chrX:46588054-46587924 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 113

Conread position: 448-578
Cow position: chrX:1996217-1996353 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 448-578
Cow position: chrX:2314384-2314520 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 118

Conread position: 448-578
Cow position: chrX:3494816-3494948 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 448-578
Cow position: chrX:5097560-5097697 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 30

Conread position: 448-578
Cow position: chrX:11656313-11656180 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 448-578
Cow position: chrX:14135909-14135777 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 448-578
Cow position: chrX:16323781-16323919 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 448-578
Cow position: chrX:17498557-17498421 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 448-578
Cow position: chrX:20339661-20339795 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 38

Conread position: 448-578
Cow position: chrX:23497463-23497592 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 59, 74

Conread position: 448-578
Cow position: chrX:26881845-26881981 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 448-578
Cow position: chrX:27175234-27175097 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 448-578
Cow position: chrX:28940478-28940344 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 87

Conread position: 448-578
Cow position: chrX:31442605-31442730 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 81

Conread position: 448-578
Cow position: chrX:35509446-35509580 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 448-578
Cow position: chrX:35659028-35658895 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 37

Conread position: 448-578
Cow position: chrX:43008844-43008708 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 30

Conread position: 448-583
Cow position: chrX:39642394-39642529 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 76

Conread position: 448-584
Cow position: chrX:8759857-8759714 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 448-585
Cow position: chrX:30962641-30962785 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 449-569
Cow position: chrX:44040410-44040284 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 449-570
Cow position: chrX:4632621-4632750 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 449-578
Cow position: chrX:3806912-3806781 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 91

Conread position: 449-578
Cow position: chrX:34504822-34504949 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 13

Conread position: 449-578
Cow position: chrX:38094293-38094421 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 59, 35

Conread position: 449-578
Cow position: chrX:38302047-38301908 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 449-578
Cow position: chrX:42875442-42875311 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 449-580
Cow position: chrX:42760486-42760349 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 449-585
Cow position: chrX:41166596-41166733 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 96

Conread position: 450-575
Cow position: chrX:783677-783546 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 116

Conread position: 450-575
Cow position: chrX:19356696-19356565 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 450-575
Cow position: chrX:38218946-38218818 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 108
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 451-567
Cow position: chrX:34991592-34991474 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 451-570
Cow position: chrX:35285405-35285280 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 451-570
Cow position: chrX:41941854-41941730 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 451-578
Cow position: chrX:9251932-9252064 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 451-578
Cow position: chrX:27668731-27668859 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 50

Conread position: 451-578
Cow position: chrX:29601597-29601729 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 451-578
Cow position: chrX:41027391-41027258 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 452-578
Cow position: chrX:1571366-1571490 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 79

Conread position: 452-578
Cow position: chrX:10479980-10479848 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 452-578
Cow position: chrX:11602257-11602386 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 33

Conread position: 452-578
Cow position: chrX:17956919-17956789 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 452-578
Cow position: chrX:27415357-27415481 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 50

Conread position: 452-578
Cow position: chrX:32910327-32910198 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 452-578
Cow position: chrX:40337141-40337009 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 452-578
Cow position: chrX:42246951-42247083 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 453-568
Cow position: chrX:1938242-1938123 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 453-578
Cow position: chrX:4399347-4399218 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 453-578
Cow position: chrX:14900281-14900403 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 74

Conread position: 453-578
Cow position: chrX:27261419-27261291 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 30

Conread position: 453-585
Cow position: chrX:38549676-38549539 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 454-570
Cow position: chrX:17929226-17929108 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 454-570
Cow position: chrX:41199450-41199334 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 69

Conread position: 454-578
Cow position: chrX:12971-12847 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 82

Conread position: 454-578
Cow position: chrX:8869176-8869303 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 454-578
Cow position: chrX:22284911-22284789 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 75

Conread position: 454-578
Cow position: chrX:23358889-23359015 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 454-578
Cow position: chrX:31279699-31279825 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 454-578
Cow position: chrX:46068536-46068660 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 18

Conread position: 454-585
Cow position: chrX:8642273-8642136 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 455-570
Cow position: chrX:13924088-13923971 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 456-578
Cow position: chrX:31489747-31489619 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 456-585
Cow position: chrX:42159168-42159033 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 457-570
Cow position: chrX:19761974-19761861 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 68

Conread position: 457-578
Cow position: chrX:29478947-29478822 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 458-574
Cow position: chrX:27202793-27202673 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 458-578
Cow position: chrX:35382818-35382938 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 61

Conread position: 458-578
Cow position: chrX:43028453-43028331 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 463-578
Cow position: chrX:31436688-31436573 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 60

Show alignments to all cow chromosomes.