Cow genome map
| Conread name: | unkn-03A04at7 |
| Conread position: | 13-295 |
| Cow position: | chr17:12476914-12477209 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 21-295 |
| Cow position: | chr17:147974-148247 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 25-289 |
| Cow position: | chr17:29897700-29897970 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 27-292 |
| Cow position: | chr17:2265247-2265526 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 27-292 |
| Cow position: | chr17:26829686-26829406 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 27-292 |
| Cow position: | chr17:37528914-37528634 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 28-289 |
| Cow position: | chr17:41893330-41893056 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 37-284 |
| Cow position: | chr17:2521373-2521110 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:4480815-4480544 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 37-292 |
| Cow position: | chr17:6612089-6612360 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:14212951-14212682 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:15809054-15809325 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:21770747-21771018 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:23321349-23321082 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 37-292 |
| Cow position: | chr17:29824894-29824622 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:30182513-30182243 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr17:37415821-37415554 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 37-295 |
| Cow position: | chr17:452919-453181 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 227 |
| Conread position: | 37-295 |
| Cow position: | chr17:731424-731157 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 37-295 |
| Cow position: | chr17:1672366-1672638 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 37-295 |
| Cow position: | chr17:13910541-13910276 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 37-295 |
| Cow position: | chr17:15853801-15854076 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 37-295 |
| Cow position: | chr17:17128072-17128345 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 37-295 |
| Cow position: | chr17:21766964-21767231 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 37-296 |
| Cow position: | chr17:29471506-29471772 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 191 |
| Conread position: | 38-296 |
| Cow position: | chr17:17221383-17221654 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 38-296 |
| Cow position: | chr17:31232745-31233012 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 39-260 |
| Cow position: | chr17:4063409-4063644 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 39-290 |
| Cow position: | chr17:1457307-1457044 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 39-292 |
| Cow position: | chr17:15438860-15439129 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 41-283 |
| Cow position: | chr17:36816958-36817204 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 41-288 |
| Cow position: | chr17:3550188-3549931 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 41-292 |
| Cow position: | chr17:2078714-2078976 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 41-295 |
| Cow position: | chr17:22233214-22232954 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 71-292 |
| Cow position: | chr17:145089-144869 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 71-292 |
| Cow position: | chr17:4211039-4211267 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 176 |
| Conread position: | 71-296 |
| Cow position: | chr17:36747412-36747187 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 73-295 |
| Cow position: | chr17:8449824-8450051 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 94-296 |
| Cow position: | chr17:21814150-21814356 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 150 |
| Conread position: | 115-284 |
| Cow position: | chr17:1709510-1709682 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 163 |
| Conread position: | 117-296 |
| Cow position: | chr17:1569061-1568879 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 118-292 |
| Cow position: | chr17:16505588-16505409 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 118-296 |
| Cow position: | chr17:980026-979843 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 119-296 |
| Cow position: | chr17:7615519-7615339 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 128-292 |
| Cow position: | chr17:3652557-3652389 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 129-284 |
| Cow position: | chr17:2177151-2177309 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-291 |
| Cow position: | chr17:31987029-31986864 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 128 |
| Conread position: | 129-292 |
| Cow position: | chr17:15094291-15094124 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-292 |
| Cow position: | chr17:20546308-20546475 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-292 |
| Cow position: | chr17:25834588-25834755 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-295 |
| Cow position: | chr17:29156544-29156714 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-296 |
| Cow position: | chr17:22774292-22774121 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 133-296 |
| Cow position: | chr17:14249931-14249763 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 112 |
Show alignments to all cow chromosomes.