Cow genome map
| Conread name: | unkn-03A04at7 | 
| Conread position: | 12-295 | 
| Cow position: | chr3:29130190-29130487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 48, 180 | 
| Conread position: | 12-295 | 
| Cow position: | chr3:64282220-64281926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 58, 99 | 
| Conread position: | 16-292 | 
| Cow position: | chr3:35918665-35918951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 56, 21 | 
| Conread position: | 18-292 | 
| Cow position: | chr3:44926916-44927205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 44, 19 | 
| Conread position: | 21-238 | 
| Cow position: | chr3:69962741-69962509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 49, 16 | 
| Conread position: | 21-272 | 
| Cow position: | chr3:74848058-74847809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 20, 38 | 
| Conread position: | 24-295 | 
| Cow position: | chr3:26660852-26660572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 46, 69 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:2572639-2572919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:7155695-7155415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:14212502-14212782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 43, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:16225989-16226266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 42, 9 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:26742761-26742481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:41019202-41018919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:53787960-53788240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:75772023-75771743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 43, 10 | 
| Conread position: | 27-292 | 
| Cow position: | chr3:76864543-76864823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 28-292 | 
| Cow position: | chr3:33469545-33469274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 44, 9 | 
| Conread position: | 36-295 | 
| Cow position: | chr3:46505888-46506163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 24, 73 | 
| Conread position: | 37-272 | 
| Cow position: | chr3:54087245-54087004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 33, 72 | 
| Conread position: | 37-280 | 
| Cow position: | chr3:60185050-60184789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 37-283 | 
| Cow position: | chr3:64024911-64024648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 33, 72 | 
| Conread position: | 37-291 | 
| Cow position: | chr3:14864005-14864273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 25, 70 | 
| Conread position: | 37-291 | 
| Cow position: | chr3:65085055-65085324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:2866534-2866263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 33, 72 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:3552443-3552708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 25, 72 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:5474660-5474931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:11417667-11417938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:13723591-13723320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 35, 72 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:14680208-14680479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 35, 72 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:19718146-19717877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 26, 74 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:19881170-19881441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:20379596-20379327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 33, 72 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:21593405-21593674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:21779657-21779386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:22352738-22353005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:29574005-29573736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 35, 209 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:34015532-34015803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 33, 83 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:36416860-36417131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:36861979-36861712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 22, 69 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:40049010-40049280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 35, 72 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:43525618-43525348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:49732675-49732406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 25, 248 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:50204686-50204956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 35, 74 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:55245664-55245935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:68273961-68274232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:68889451-68889181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:69271722-69271993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-292 | 
| Cow position: | chr3:76187660-76187931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 26, 73 | 
| Conread position: | 37-294 | 
| Cow position: | chr3:66968758-66968486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 35, 70 | 
| Conread position: | 37-294 | 
| Cow position: | chr3:74060590-74060862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 35, 72 | 
| Conread position: | 37-295 | 
| Cow position: | chr3:7245983-7245711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 25, 72 | 
| Conread position: | 37-295 | 
| Cow position: | chr3:26722691-26722417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 25, 72 | 
| Conread position: | 37-295 | 
| Cow position: | chr3:28435578-28435304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-295 | 
| Cow position: | chr3:35612275-35612542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 37-295 | 
| Cow position: | chr3:45977623-45977894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 33, 47 | 
| Conread position: | 37-295 | 
| Cow position: | chr3:64653789-64654063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 37-296 | 
| Cow position: | chr3:24351814-24352082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 33, 67 | 
| Conread position: | 38-292 | 
| Cow position: | chr3:18575481-18575233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 92, 22 | 
| Conread position: | 38-296 | 
| Cow position: | chr3:40004362-40004115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 33, 73 | 
| Conread position: | 38-296 | 
| Cow position: | chr3:50921161-50921433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 32, 163 | 
| Conread position: | 39-292 | 
| Cow position: | chr3:2117569-2117837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 33, 184 | 
| Conread position: | 39-292 | 
| Cow position: | chr3:24265321-24265590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 33, 70 | 
| Conread position: | 39-292 | 
| Cow position: | chr3:55374208-55374467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 68 | 
| Conread position: | 39-295 | 
| Cow position: | chr3:6785440-6785711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 39-296 | 
| Cow position: | chr3:76000838-76000563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 23, 69 | 
| Conread position: | 40-295 | 
| Cow position: | chr3:58950585-58950854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 20, 73 | 
| Conread position: | 40-296 | 
| Cow position: | chr3:77726579-77726831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 24, 73 | 
| Conread position: | 41-292 | 
| Cow position: | chr3:37451225-37451493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 70 | 
| Conread position: | 41-292 | 
| Cow position: | chr3:45184860-45184596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 21, 203 | 
| Conread position: | 41-295 | 
| Cow position: | chr3:15663319-15663054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 24, 68 | 
| Conread position: | 41-296 | 
| Cow position: | chr3:54863497-54863226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6.00036e-42 | 
| Alignm gaps (pig, cow): | 29, 13 | 
| Conread position: | 41-296 | 
| Cow position: | chr3:77225858-77226117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 23, 208 | 
| Conread position: | 42-295 | 
| Cow position: | chr3:80817954-80818212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 91, 18 | 
| Conread position: | 44-288 | 
| Cow position: | chr3:70914135-70913881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 18, 213 | 
| Conread position: | 44-289 | 
| Cow position: | chr3:62793945-62793693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 44-290 | 
| Cow position: | chr3:35056109-35056366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 18, 65 | 
| Conread position: | 44-292 | 
| Cow position: | chr3:48362065-48362320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 26, 120 | 
| Conread position: | 44-296 | 
| Cow position: | chr3:33254731-33254467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 23, 251 | 
| Conread position: | 60-270 | 
| Cow position: | chr3:22272526-22272315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 70, 43 | 
| Conread position: | 60-296 | 
| Cow position: | chr3:17460372-17460612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 14, 33 | 
| Conread position: | 67-230 | 
| Cow position: | chr3:63238873-63238707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 7, 38 | 
| Conread position: | 67-285 | 
| Cow position: | chr3:22220299-22220525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 70-292 | 
| Cow position: | chr3:6828354-6828578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 60, 28 | 
| Conread position: | 71-292 | 
| Cow position: | chr3:50346978-50347199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 91, 21 | 
| Conread position: | 71-295 | 
| Cow position: | chr3:61677698-61677929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 50, 34 | 
| Conread position: | 71-296 | 
| Cow position: | chr3:12667866-12668096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 92, 32 | 
| Conread position: | 71-296 | 
| Cow position: | chr3:14724282-14724510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 62, 34 | 
| Conread position: | 73-296 | 
| Cow position: | chr3:8391530-8391751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 5e-40 | 
| Alignm gaps (pig, cow): | 92, 28 | 
| Conread position: | 114-290 | 
| Cow position: | chr3:28640140-28640322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 114-295 | 
| Cow position: | chr3:16657665-16657480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 118-292 | 
| Cow position: | chr3:13360660-13360839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 118-292 | 
| Cow position: | chr3:51256150-51256330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 118-292 | 
| Cow position: | chr3:53880054-53879875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 118-292 | 
| Cow position: | chr3:79668323-79668502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 118-296 | 
| Cow position: | chr3:16156736-16156916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 16, 170 | 
| Conread position: | 118-296 | 
| Cow position: | chr3:31021895-31022075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 118-296 | 
| Cow position: | chr3:39878965-39878782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 119-296 | 
| Cow position: | chr3:14452876-14453054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 46, 20 | 
| Conread position: | 119-296 | 
| Cow position: | chr3:54788298-54788483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 14, 165 | 
| Conread position: | 122-290 | 
| Cow position: | chr3:56099792-56099625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 42, 63 | 
| Conread position: | 129-287 | 
| Cow position: | chr3:13311779-13311615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-290 | 
| Cow position: | chr3:14028210-14028375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:6024634-6024467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:20074312-20074479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:22235277-22235109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:30752808-30752975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:34503909-34503744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:35109451-35109618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:49976302-49976136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 9e-24 | 
| Alignm gaps (pig, cow): | 36, 136 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:58336531-58336698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:65178596-65178762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:65536339-65536506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 8e-23 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:70215396-70215563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:73763407-73763240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-292 | 
| Cow position: | chr3:83767470-83767637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-293 | 
| Cow position: | chr3:25753478-25753645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 129-295 | 
| Cow position: | chr3:19216124-19216295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 129-295 | 
| Cow position: | chr3:42186694-42186863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 36, 101 | 
| Conread position: | 129-295 | 
| Cow position: | chr3:68043280-68043111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 129-295 | 
| Cow position: | chr3:76136543-76136716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 129-296 | 
| Cow position: | chr3:4030967-4031137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 36, 157 | 
| Conread position: | 129-296 | 
| Cow position: | chr3:54876888-54877055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 36, 112 | 
| Conread position: | 129-296 | 
| Cow position: | chr3:72390143-72390313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 66, 0 | 
Show alignments to all cow chromosomes.
