Cow genome map
| Conread name: | unkn-03A04at7 |
| Conread position: | 10-296 |
| Cow position: | chr5:16085809-16085509 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 27-292 |
| Cow position: | chr5:295282-295558 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 27-292 |
| Cow position: | chr5:4754116-4753836 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 27-292 |
| Cow position: | chr5:6125145-6124866 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 27-292 |
| Cow position: | chr5:6585436-6585157 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 27-292 |
| Cow position: | chr5:34670071-34669792 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 27-292 |
| Cow position: | chr5:34683343-34683065 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 27-295 |
| Cow position: | chr5:76099013-76098730 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 28-292 |
| Cow position: | chr5:59064462-59064740 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 37-289 |
| Cow position: | chr5:9235379-9235117 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 37-290 |
| Cow position: | chr5:28947379-28947110 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 37-292 |
| Cow position: | chr5:443283-443012 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr5:445505-445776 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr5:1395432-1395165 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 37-292 |
| Cow position: | chr5:18118949-18118678 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr5:29634455-29634726 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr5:31709326-31709597 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 37-292 |
| Cow position: | chr5:39362898-39363169 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr5:44275627-44275892 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 37-292 |
| Cow position: | chr5:48534883-48535133 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 37-292 |
| Cow position: | chr5:54136612-54136341 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-292 |
| Cow position: | chr5:54927893-54927625 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 232 |
| Conread position: | 37-292 |
| Cow position: | chr5:54930221-54929953 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 232 |
| Conread position: | 37-292 |
| Cow position: | chr5:58191944-58192212 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 35, 191 |
| Conread position: | 37-292 |
| Cow position: | chr5:58199036-58199306 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-295 |
| Cow position: | chr5:4015846-4015572 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-295 |
| Cow position: | chr5:5716049-5715789 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 37-295 |
| Cow position: | chr5:5924943-5924677 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 37-295 |
| Cow position: | chr5:21187960-21188234 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 37-295 |
| Cow position: | chr5:29256186-29255914 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 37-295 |
| Cow position: | chr5:51746250-51746518 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 37-295 |
| Cow position: | chr5:55722555-55722829 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 37-295 |
| Cow position: | chr5:58245358-58245632 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 37-295 |
| Cow position: | chr5:64061354-64061627 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 37-296 |
| Cow position: | chr5:4629794-4630061 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 68 |
| Conread position: | 37-296 |
| Cow position: | chr5:7552802-7553066 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 37-296 |
| Cow position: | chr5:46626250-46625976 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 37-296 |
| Cow position: | chr5:49565598-49565865 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 38-290 |
| Cow position: | chr5:18126652-18126910 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 38-292 |
| Cow position: | chr5:45179819-45179550 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 38-295 |
| Cow position: | chr5:12133621-12133893 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 38-296 |
| Cow position: | chr5:46707667-46707938 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 39-283 |
| Cow position: | chr5:3970553-3970810 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 219 |
| Conread position: | 39-292 |
| Cow position: | chr5:46779544-46779811 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 40-290 |
| Cow position: | chr5:47872077-47871813 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 41-288 |
| Cow position: | chr5:48409413-48409156 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 41-296 |
| Cow position: | chr5:32810996-32810729 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 41-296 |
| Cow position: | chr5:62159895-62159626 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 42-288 |
| Cow position: | chr5:16053692-16053926 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 43-284 |
| Cow position: | chr5:48056094-48056338 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 43-290 |
| Cow position: | chr5:40928988-40928731 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 43-296 |
| Cow position: | chr5:47854859-47855128 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 44-284 |
| Cow position: | chr5:27178682-27178924 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 44-296 |
| Cow position: | chr5:6572210-6571950 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 58-292 |
| Cow position: | chr5:45941937-45941701 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 71-292 |
| Cow position: | chr5:60446501-60446729 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 71-295 |
| Cow position: | chr5:23829118-23828897 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 71-296 |
| Cow position: | chr5:68593503-68593721 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 72-288 |
| Cow position: | chr5:41951989-41951773 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 116-293 |
| Cow position: | chr5:66256749-66256930 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 118-292 |
| Cow position: | chr5:2395190-2395011 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 118-294 |
| Cow position: | chr5:46667192-46667373 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 118-295 |
| Cow position: | chr5:6060513-6060331 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 118-295 |
| Cow position: | chr5:39749324-39749142 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 119-292 |
| Cow position: | chr5:1344769-1344594 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 76, 107 |
| Conread position: | 119-296 |
| Cow position: | chr5:58461570-58461392 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 124-292 |
| Cow position: | chr5:6576466-6576295 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 41, 113 |
| Conread position: | 124-296 |
| Cow position: | chr5:7140971-7140799 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 128-295 |
| Cow position: | chr5:32697662-32697492 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 124 |
| Conread position: | 129-283 |
| Cow position: | chr5:59782632-59782469 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-287 |
| Cow position: | chr5:30294438-30294595 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 129-292 |
| Cow position: | chr5:4683370-4683204 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-292 |
| Cow position: | chr5:28012987-28013154 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 129-292 |
| Cow position: | chr5:32755320-32755154 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 129-292 |
| Cow position: | chr5:34559276-34559442 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 129-292 |
| Cow position: | chr5:36369862-36369695 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-292 |
| Cow position: | chr5:54951992-54951825 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-295 |
| Cow position: | chr5:4963256-4963086 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-295 |
| Cow position: | chr5:43437812-43437642 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 129-296 |
| Cow position: | chr5:14558328-14558157 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-296 |
| Cow position: | chr5:31916745-31916912 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 129-296 |
| Cow position: | chr5:37384405-37384234 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 129-296 |
| Cow position: | chr5:39936230-39936400 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.