Cow genome map
| Conread name: | unkn-08B04at3 |
| Conread position: | 444-607 |
| Cow position: | chr15:4170185-4170021 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 445-583 |
| Cow position: | chr15:6078243-6078381 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 445-635 |
| Cow position: | chr15:8098997-8099183 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 115 |
| Conread position: | 451-596 |
| Cow position: | chr15:13871280-13871428 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-602 |
| Cow position: | chr15:4195978-4196132 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-602 |
| Cow position: | chr15:44828330-44828479 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 451-603 |
| Cow position: | chr15:22204598-22204443 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-604 |
| Cow position: | chr15:2648141-2647985 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-604 |
| Cow position: | chr15:13428554-13428710 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-604 |
| Cow position: | chr15:20748931-20749086 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 451-606 |
| Cow position: | chr15:1519634-1519476 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-606 |
| Cow position: | chr15:1772014-1772172 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-606 |
| Cow position: | chr15:2076164-2076320 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 451-606 |
| Cow position: | chr15:29009358-29009516 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-609 |
| Cow position: | chr15:18576239-18576396 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 132, 28 |
| Conread position: | 451-609 |
| Cow position: | chr15:28490626-28490465 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 451-609 |
| Cow position: | chr15:42490721-42490880 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 451-637 |
| Cow position: | chr15:11598599-11598416 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 160 |
| Conread position: | 455-637 |
| Cow position: | chr15:24793570-24793746 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 458-609 |
| Cow position: | chr15:444133-444285 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 468-604 |
| Cow position: | chr15:18268453-18268316 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 468-605 |
| Cow position: | chr15:7922107-7921969 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 469-607 |
| Cow position: | chr15:8000709-8000572 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 129 |
| Conread position: | 470-577 |
| Cow position: | chr15:4961181-4961286 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 45 |
| Conread position: | 470-592 |
| Cow position: | chr15:4143287-4143164 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 470-601 |
| Cow position: | chr15:1763628-1763760 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 470-604 |
| Cow position: | chr15:1834924-1834789 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 115, 125 |
| Conread position: | 470-604 |
| Cow position: | chr15:21877821-21877686 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 470-604 |
| Cow position: | chr15:22920661-22920796 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 470-604 |
| Cow position: | chr15:50124403-50124268 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 470-606 |
| Cow position: | chr15:2011620-2011756 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 112, 40 |
| Conread position: | 470-606 |
| Cow position: | chr15:36970460-36970597 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 470-606 |
| Cow position: | chr15:38979455-38979592 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 470-609 |
| Cow position: | chr15:35734993-35735131 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 470-635 |
| Cow position: | chr15:1781790-1781950 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 112, 139 |
| Conread position: | 470-635 |
| Cow position: | chr15:3010315-3010155 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 110, 139 |
| Conread position: | 470-637 |
| Cow position: | chr15:4681766-4681927 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 112, 127 |
| Conread position: | 470-637 |
| Cow position: | chr15:4733397-4733557 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 470-637 |
| Cow position: | chr15:21816210-21816048 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 470-637 |
| Cow position: | chr15:53338575-53338727 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 473-606 |
| Cow position: | chr15:6156415-6156281 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 473-606 |
| Cow position: | chr15:32494846-32494713 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 17 |
| Conread position: | 474-637 |
| Cow position: | chr15:51671893-51672046 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 75 |
| Conread position: | 475-583 |
| Cow position: | chr15:36648453-36648561 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 475-588 |
| Cow position: | chr15:7233853-7233966 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 475-603 |
| Cow position: | chr15:4811865-4811993 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 475-603 |
| Cow position: | chr15:6277710-6277588 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 475-604 |
| Cow position: | chr15:10888151-10888280 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 98 |
| Conread position: | 475-606 |
| Cow position: | chr15:7544421-7544553 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 475-606 |
| Cow position: | chr15:25789427-25789295 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 475-606 |
| Cow position: | chr15:37392042-37392174 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 475-607 |
| Cow position: | chr15:7522947-7522818 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 475-607 |
| Cow position: | chr15:23157288-23157154 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 475-609 |
| Cow position: | chr15:55742-55878 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 475-609 |
| Cow position: | chr15:690333-690466 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 109, 73 |
| Conread position: | 475-611 |
| Cow position: | chr15:14583075-14582940 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 475-637 |
| Cow position: | chr15:3037969-3037816 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 475-637 |
| Cow position: | chr15:41365721-41365878 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 134 |
| Conread position: | 479-588 |
| Cow position: | chr15:44069338-44069447 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 479-592 |
| Cow position: | chr15:32680004-32679890 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 479-600 |
| Cow position: | chr15:31358448-31358570 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-604 |
| Cow position: | chr15:7260173-7260298 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 26 |
| Conread position: | 479-606 |
| Cow position: | chr15:316804-316680 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 36 |
| Conread position: | 479-606 |
| Cow position: | chr15:12421621-12421493 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-606 |
| Cow position: | chr15:17039707-17039579 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 479-606 |
| Cow position: | chr15:17291984-17292112 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-606 |
| Cow position: | chr15:24294636-24294764 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:3261862-3261731 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:4921689-4921819 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 479-609 |
| Cow position: | chr15:6472365-6472233 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:7836789-7836919 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 104, 91 |
| Conread position: | 479-609 |
| Cow position: | chr15:8749972-8750103 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:15347575-15347444 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:18333282-18333151 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:19738508-19738377 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:21666201-21666071 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 479-609 |
| Cow position: | chr15:42936259-42936389 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 104, 91 |
| Conread position: | 479-637 |
| Cow position: | chr15:21961052-21961205 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 129 |
| Conread position: | 480-606 |
| Cow position: | chr15:525304-525178 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 481-609 |
| Cow position: | chr15:6554307-6554179 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 483-606 |
| Cow position: | chr15:4764755-4764878 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 27 |
Show alignments to all cow chromosomes.