Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-115 |
| Cow position: | chr12:35799381-35799266 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-181 |
| Cow position: | chr12:34090269-34090096 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 1-199 |
| Cow position: | chr12:34849711-34849901 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 1-199 |
| Cow position: | chr12:34852348-34852538 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 1-201 |
| Cow position: | chr12:29691049-29691245 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 1-202 |
| Cow position: | chr12:5497681-5497875 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 1-203 |
| Cow position: | chr12:42918612-42918421 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 121, 94 |
| Conread position: | 1-208 |
| Cow position: | chr12:18094038-18093834 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 1-214 |
| Cow position: | chr12:45225841-45226052 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 1-215 |
| Cow position: | chr12:1883390-1883595 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 123, 32 |
| Conread position: | 1-218 |
| Cow position: | chr12:39781192-39781408 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 124, 72 |
| Conread position: | 1-228 |
| Cow position: | chr12:47486985-47486752 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-229 |
| Cow position: | chr12:30210636-30210401 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 1-237 |
| Cow position: | chr12:25619230-25619459 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 130, 80 |
| Conread position: | 1-238 |
| Cow position: | chr12:7996559-7996325 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 124, 94 |
| Conread position: | 1-239 |
| Cow position: | chr12:1031132-1030890 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 150 |
| Conread position: | 1-239 |
| Cow position: | chr12:15230673-15230905 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 1-239 |
| Cow position: | chr12:17109749-17109978 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 1-239 |
| Cow position: | chr12:18768924-18769161 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 56 |
| Conread position: | 1-239 |
| Cow position: | chr12:24559507-24559268 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 121, 215 |
| Conread position: | 1-239 |
| Cow position: | chr12:34465851-34466095 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 196 |
| Conread position: | 1-239 |
| Cow position: | chr12:40931468-40931702 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 2-140 |
| Cow position: | chr12:15066970-15066830 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 2-185 |
| Cow position: | chr12:25933827-25933648 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 123, 13 |
| Conread position: | 2-199 |
| Cow position: | chr12:44908163-44907966 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 115, 151 |
| Conread position: | 2-227 |
| Cow position: | chr12:5680831-5680604 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 122, 221 |
| Conread position: | 2-228 |
| Cow position: | chr12:31429426-31429647 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 70 |
| Conread position: | 2-233 |
| Cow position: | chr12:18966610-18966837 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 122, 18 |
| Conread position: | 2-238 |
| Cow position: | chr12:33458287-33458058 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 122, 61 |
| Conread position: | 2-239 |
| Cow position: | chr12:23983811-23983573 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 145 |
| Conread position: | 3-170 |
| Cow position: | chr12:11080953-11081121 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 3-189 |
| Cow position: | chr12:16850770-16850954 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 3-203 |
| Cow position: | chr12:1505162-1504969 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 3-208 |
| Cow position: | chr12:24529240-24529438 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 96 |
| Conread position: | 3-214 |
| Cow position: | chr12:5899653-5899460 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-226 |
| Cow position: | chr12:47804300-47804079 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 67 |
| Conread position: | 3-227 |
| Cow position: | chr12:5538827-5539043 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 126, 38 |
| Conread position: | 3-239 |
| Cow position: | chr12:749504-749279 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 205, 71 |
| Conread position: | 3-239 |
| Cow position: | chr12:5658600-5658837 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 121, 140 |
| Conread position: | 3-239 |
| Cow position: | chr12:27055748-27055517 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 3-239 |
| Cow position: | chr12:42478155-42477924 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 4-178 |
| Cow position: | chr12:11520318-11520147 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 4-215 |
| Cow position: | chr12:10763409-10763190 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 4-239 |
| Cow position: | chr12:25606852-25606614 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 4-239 |
| Cow position: | chr12:29448790-29448556 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 4-239 |
| Cow position: | chr12:48425855-48425624 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 118, 136 |
| Conread position: | 5-123 |
| Cow position: | chr12:38096268-38096149 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 5-184 |
| Cow position: | chr12:16205868-16205692 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 5-195 |
| Cow position: | chr12:14855957-14855769 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 152 |
| Conread position: | 5-208 |
| Cow position: | chr12:7645666-7645862 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 5-239 |
| Cow position: | chr12:6688048-6687803 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 238 |
| Conread position: | 5-239 |
| Cow position: | chr12:25312231-25312459 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 55 |
| Conread position: | 6-228 |
| Cow position: | chr12:30065076-30064860 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 9-239 |
| Cow position: | chr12:4583082-4582856 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 10-234 |
| Cow position: | chr12:41642571-41642346 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 99, 85 |
| Conread position: | 11-198 |
| Cow position: | chr12:34242187-34242375 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 12-221 |
| Cow position: | chr12:17262986-17262783 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 14-149 |
| Cow position: | chr12:24681954-24681818 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 14-208 |
| Cow position: | chr12:3816622-3816425 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 14-221 |
| Cow position: | chr12:16543443-16543653 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 14-227 |
| Cow position: | chr12:30596604-30596388 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 110, 213 |
| Conread position: | 14-229 |
| Cow position: | chr12:44057652-44057441 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 15-230 |
| Cow position: | chr12:12331375-12331591 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 106, 168 |
| Conread position: | 15-239 |
| Cow position: | chr12:3616136-3615912 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 158 |
| Conread position: | 16-200 |
| Cow position: | chr12:31258140-31257968 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 17-186 |
| Cow position: | chr12:10846522-10846685 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 20-186 |
| Cow position: | chr12:43671831-43671670 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 53 |
| Conread position: | 22-233 |
| Cow position: | chr12:32413645-32413429 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 24-234 |
| Cow position: | chr12:4020364-4020575 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 136 |
| Conread position: | 27-239 |
| Cow position: | chr12:31198887-31198676 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 7 |
| Conread position: | 29-205 |
| Cow position: | chr12:31528735-31528912 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 80 |
| Conread position: | 30-177 |
| Cow position: | chr12:27038623-27038770 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 118 |
| Conread position: | 40-201 |
| Cow position: | chr12:13657634-13657796 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.