Cow genome map

Conread name: unkn-09A08GT3

Conread position: 1-158
Cow position: chr15:48013545-48013387 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 86

Conread position: 1-167
Cow position: chr15:20402640-20402476 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 13

Conread position: 1-177
Cow position: chr15:39916594-39916769 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 108

Conread position: 1-186
Cow position: chr15:7980093-7980273 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 123, 90

Conread position: 1-187
Cow position: chr15:10189268-10189448 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 41

Conread position: 1-206
Cow position: chr15:24411323-24411527 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 119, 149

Conread position: 1-208
Cow position: chr15:30958308-30958105 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 123, 39

Conread position: 1-212
Cow position: chr15:450148-449939 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 205, 72

Conread position: 1-215
Cow position: chr15:23992752-23992964 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 152

Conread position: 1-216
Cow position: chr15:20282606-20282404 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 127, 39

Conread position: 1-217
Cow position: chr15:37918548-37918770 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 123, 0

Conread position: 1-221
Cow position: chr15:35967585-35967362 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 46

Conread position: 1-229
Cow position: chr15:33624855-33625084 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 78

Conread position: 1-234
Cow position: chr15:11957443-11957674 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 42, 17

Conread position: 1-234
Cow position: chr15:17788014-17788242 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 124, 13

Conread position: 1-237
Cow position: chr15:6491690-6491454 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 192

Conread position: 1-238
Cow position: chr15:9494394-9494156 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 16

Conread position: 1-239
Cow position: chr15:3571686-3571920 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 128, 39

Conread position: 1-239
Cow position: chr15:8021958-8022190 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 128, 42

Conread position: 1-239
Cow position: chr15:14758347-14758114 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 97, 148

Conread position: 2-223
Cow position: chr15:25688869-25689089 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 122, 43

Conread position: 2-228
Cow position: chr15:4508054-4508276 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 121, 52

Conread position: 2-228
Cow position: chr15:34255815-34255599 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 126, 41

Conread position: 2-229
Cow position: chr15:1017845-1017615 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 99

Conread position: 2-234
Cow position: chr15:31599241-31599466 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 122, 21

Conread position: 2-234
Cow position: chr15:31907556-31907781 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 2-237
Cow position: chr15:44879510-44879739 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 96, 18

Conread position: 2-238
Cow position: chr15:15214920-15215160 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 123, 0

Conread position: 2-239
Cow position: chr15:8230659-8230425 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 122, 38

Conread position: 2-239
Cow position: chr15:24977270-24977040 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 122, 69

Conread position: 2-239
Cow position: chr15:27247408-27247640 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 132

Conread position: 3-154
Cow position: chr15:2117789-2117940 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 121, 67

Conread position: 3-173
Cow position: chr15:51361128-51361300 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 121, 0

Conread position: 3-180
Cow position: chr15:31483273-31483452 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 125, 0

Conread position: 3-191
Cow position: chr15:19323227-19323413 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 105

Conread position: 3-201
Cow position: chr15:50177013-50177213 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 0

Conread position: 3-208
Cow position: chr15:17213367-17213563 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 122, 17

Conread position: 3-208
Cow position: chr15:19725805-19725610 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 193, 104

Conread position: 3-208
Cow position: chr15:20777922-20778127 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 125, 17

Conread position: 3-221
Cow position: chr15:26934045-26933826 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 118, 0

Conread position: 3-223
Cow position: chr15:23109379-23109158 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 3-228
Cow position: chr15:34037282-34037061 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 121, 35

Conread position: 3-229
Cow position: chr15:42195357-42195136 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 73, 40

Conread position: 3-239
Cow position: chr15:3572793-3572563 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 122, 11

Conread position: 3-239
Cow position: chr15:22886462-22886688 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 122, 140

Conread position: 3-239
Cow position: chr15:50322497-50322734 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 65, 54

Conread position: 4-166
Cow position: chr15:2201209-2201373 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 93

Conread position: 4-173
Cow position: chr15:25111339-25111167 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 22

Conread position: 4-185
Cow position: chr15:52480040-52480215 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 34

Conread position: 4-194
Cow position: chr15:23548082-23547897 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 125, 39

Conread position: 4-217
Cow position: chr15:24284891-24285098 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 120, 11

Conread position: 4-222
Cow position: chr15:39200689-39200903 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 124, 69

Conread position: 4-223
Cow position: chr15:14020384-14020613 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 4-239
Cow position: chr15:47821285-47821514 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 118, 11

Conread position: 5-217
Cow position: chr15:44296996-44297200 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 120, 64

Conread position: 5-225
Cow position: chr15:43611990-43612209 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 113, 0

Conread position: 5-229
Cow position: chr15:12170150-12170376 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 170

Conread position: 5-233
Cow position: chr15:49238082-49237859 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 119, 10

Conread position: 5-239
Cow position: chr15:6749938-6749709 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 119, 9

Conread position: 5-239
Cow position: chr15:39894504-39894726 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 6-239
Cow position: chr15:20482939-20482707 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 14

Conread position: 6-239
Cow position: chr15:44252273-44252502 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 116, 89

Conread position: 9-237
Cow position: chr15:24864353-24864132 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 116, 34

Conread position: 9-237
Cow position: chr15:27863416-27863188 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 217

Conread position: 11-120
Cow position: chr15:52389505-52389614 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 14-228
Cow position: chr15:20370809-20370599 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 115, 81

Conread position: 14-234
Cow position: chr15:10570698-10570480 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 110, 81

Conread position: 15-237
Cow position: chr15:9971062-9970839 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 109, 155

Conread position: 18-221
Cow position: chr15:31545429-31545225 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 0

Conread position: 18-226
Cow position: chr15:31617087-31616880 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 109, 193

Conread position: 18-228
Cow position: chr15:35283546-35283338 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 25

Conread position: 19-176
Cow position: chr15:7059484-7059327 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 40

Conread position: 19-202
Cow position: chr15:10569185-10569005 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 26

Conread position: 20-217
Cow position: chr15:10303143-10303341 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 21-213
Cow position: chr15:36659192-36659004 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 136

Conread position: 22-239
Cow position: chr15:40498366-40498152 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 103, 23

Conread position: 23-239
Cow position: chr15:21836613-21836820 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 97, 64

Conread position: 28-167
Cow position: chr15:28177383-28177523 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 8

Conread position: 29-239
Cow position: chr15:53045947-53045739 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 141
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 114, 103

Conread position: 31-239
Cow position: chr15:7962014-7962218 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 193, 74

Conread position: 41-239
Cow position: chr15:19280150-19279949 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 147

Conread position: 43-239
Cow position: chr15:9000903-9001091 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 43-239
Cow position: chr15:26421655-26421461 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 7, 116

Conread position: 44-239
Cow position: chr15:9178257-9178070 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 111

Conread position: 55-225
Cow position: chr15:38322791-38322960 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 70, 155

Conread position: 59-224
Cow position: chr15:32011905-32011743 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 148, 59

Conread position: 59-233
Cow position: chr15:40117488-40117313 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 69, 77

Conread position: 61-185
Cow position: chr15:17911104-17911230 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 64-180
Cow position: chr15:35663415-35663532 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 75-229
Cow position: chr15:46005672-46005522 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 82

Conread position: 93-239
Cow position: chr15:27732408-27732552 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 11

Show alignments to all cow chromosomes.