Cow genome map

Conread name: unkn-09A08GT3

Conread position: 1-113
Cow position: chr16:48542025-48542136 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 1-146
Cow position: chr16:55070332-55070480 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 1-147
Cow position: chr16:11772063-11772209 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 104, 13

Conread position: 1-212
Cow position: chr16:8025664-8025880 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 19

Conread position: 1-216
Cow position: chr16:44722850-44723058 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 14

Conread position: 1-219
Cow position: chr16:2618800-2619011 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 126, 150

Conread position: 1-221
Cow position: chr16:47909155-47909379 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 1-223
Cow position: chr16:22808368-22808593 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 71, 191

Conread position: 1-223
Cow position: chr16:29655520-29655287 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 1-223
Cow position: chr16:41689878-41689657 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 121, 71

Conread position: 1-233
Cow position: chr16:10857436-10857667 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 132, 94

Conread position: 1-234
Cow position: chr16:44551-44325 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 170, 101

Conread position: 1-237
Cow position: chr16:11662219-11661987 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 123, 19

Conread position: 1-237
Cow position: chr16:46627656-46627885 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 13, 94

Conread position: 1-239
Cow position: chr16:15809165-15808925 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 80

Conread position: 1-239
Cow position: chr16:18557076-18557313 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 211

Conread position: 1-239
Cow position: chr16:23066842-23066611 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 138, 119

Conread position: 1-239
Cow position: chr16:48493368-48493129 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 123, 214

Conread position: 1-239
Cow position: chr16:52577645-52577406 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 1-239
Cow position: chr16:56445235-56445463 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 126, 50

Conread position: 2-99
Cow position: chr16:16107013-16106916 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-147
Cow position: chr16:4708715-4708861 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 2-148
Cow position: chr16:49122080-49122226 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 69

Conread position: 2-180
Cow position: chr16:10611447-10611615 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 120, 41

Conread position: 2-186
Cow position: chr16:50114374-50114187 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 85, 0

Conread position: 2-215
Cow position: chr16:16055875-16056087 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 123, 60

Conread position: 2-238
Cow position: chr16:38621141-38620909 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 33, 42

Conread position: 2-239
Cow position: chr16:1440612-1440388 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 2-239
Cow position: chr16:16524184-16524408 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 215, 90

Conread position: 2-239
Cow position: chr16:16946346-16946588 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 128

Conread position: 2-239
Cow position: chr16:31419637-31419396 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 217

Conread position: 2-239
Cow position: chr16:54515906-54515675 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 154

Conread position: 3-125
Cow position: chr16:27005488-27005369 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 3-154
Cow position: chr16:10406394-10406548 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 3-158
Cow position: chr16:11777012-11777175 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 3-174
Cow position: chr16:34384884-34384718 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 3-186
Cow position: chr16:30930064-30929882 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 117, 140

Conread position: 3-194
Cow position: chr16:5019896-5020075 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 121, 32

Conread position: 3-201
Cow position: chr16:18692963-18693164 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 3-221
Cow position: chr16:33121789-33121578 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 102, 95

Conread position: 3-224
Cow position: chr16:45047451-45047666 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 3-239
Cow position: chr16:18427365-18427137 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 121, 40

Conread position: 3-239
Cow position: chr16:26134188-26134419 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 114, 37

Conread position: 4-160
Cow position: chr16:20664472-20664317 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 68

Conread position: 4-186
Cow position: chr16:31490499-31490321 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 77

Conread position: 4-208
Cow position: chr16:49321139-49320944 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 4-239
Cow position: chr16:11085197-11085432 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 53

Conread position: 5-167
Cow position: chr16:47116248-47116090 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 120, 33

Conread position: 5-225
Cow position: chr16:19977138-19976933 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 37

Conread position: 5-239
Cow position: chr16:689887-689652 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 7, 48

Conread position: 5-239
Cow position: chr16:30639509-30639286 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 7, 134

Conread position: 5-239
Cow position: chr16:53267906-53267674 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 55

Conread position: 6-154
Cow position: chr16:51652849-51652699 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 6-187
Cow position: chr16:9510692-9510870 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 149

Conread position: 6-218
Cow position: chr16:20260654-20260448 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 147, 38

Conread position: 6-233
Cow position: chr16:16546250-16546029 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 32

Conread position: 6-239
Cow position: chr16:19002909-19003139 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 149

Conread position: 6-239
Cow position: chr16:28454119-28454340 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 119, 8

Conread position: 8-239
Cow position: chr16:27014081-27013844 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 116, 52

Conread position: 9-134
Cow position: chr16:10331799-10331673 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 9-140
Cow position: chr16:23990332-23990461 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 116, 86

Conread position: 9-185
Cow position: chr16:3566341-3566171 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 9-239
Cow position: chr16:36930139-36930368 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 72

Conread position: 11-204
Cow position: chr16:8704433-8704253 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 111, 87

Conread position: 11-221
Cow position: chr16:8315016-8315229 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 87

Conread position: 11-228
Cow position: chr16:13660057-13660273 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 113, 133

Conread position: 11-237
Cow position: chr16:45693320-45693099 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 77, 32

Conread position: 14-158
Cow position: chr16:47963466-47963320 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 14-235
Cow position: chr16:49511758-49511530 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 114, 46

Conread position: 14-237
Cow position: chr16:44580902-44581122 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 108, 22

Conread position: 14-239
Cow position: chr16:26155968-26156186 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 68

Conread position: 15-179
Cow position: chr16:56283118-56282955 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 70, 0

Conread position: 15-230
Cow position: chr16:15938358-15938571 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 0

Conread position: 15-239
Cow position: chr16:43082068-43082284 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 110, 28

Conread position: 16-229
Cow position: chr16:27723402-27723183 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 56, 205

Conread position: 19-166
Cow position: chr16:10617684-10617833 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 102, 0

Conread position: 19-186
Cow position: chr16:5580484-5580315 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 19-228
Cow position: chr16:42312553-42312347 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 55, 0

Conread position: 19-233
Cow position: chr16:28827008-28827222 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 110, 189

Conread position: 19-239
Cow position: chr16:32837380-32837595 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 105, 8

Conread position: 20-213
Cow position: chr16:41711841-41711650 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 20

Conread position: 20-216
Cow position: chr16:15806120-15805925 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 88

Conread position: 20-239
Cow position: chr16:21462194-21461980 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 77

Conread position: 23-239
Cow position: chr16:12072800-12072591 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 28-189
Cow position: chr16:44693024-44693185 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 97, 116

Conread position: 28-209
Cow position: chr16:39156274-39156461 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 96, 167

Conread position: 35-194
Cow position: chr16:23978280-23978440 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 89, 0

Conread position: 35-208
Cow position: chr16:55586457-55586625 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 89, 103

Conread position: 36-209
Cow position: chr16:5511959-5511786 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 92, 161

Conread position: 40-217
Cow position: chr16:23163427-23163603 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 85, 170

Conread position: 40-239
Cow position: chr16:37719307-37719107 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 87, 47

Conread position: 43-233
Cow position: chr16:10303605-10303791 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 86, 114

Conread position: 45-239
Cow position: chr16:37278065-37277875 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 80, 21

Conread position: 55-239
Cow position: chr16:52222198-52222377 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 19

Conread position: 58-216
Cow position: chr16:28266900-28267051 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 40

Conread position: 64-239
Cow position: chr16:42257570-42257400 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 10

Conread position: 64-239
Cow position: chr16:56104789-56104963 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 63, 31

Conread position: 83-239
Cow position: chr16:4979908-4979750 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.