Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-149 |
| Cow position: | chr17:42775041-42775190 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-166 |
| Cow position: | chr17:8094068-8093908 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 37 |
| Conread position: | 1-179 |
| Cow position: | chr17:8615621-8615789 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-183 |
| Cow position: | chr17:12768582-12768762 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 26 |
| Conread position: | 1-205 |
| Cow position: | chr17:36818263-36818062 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-215 |
| Cow position: | chr17:20652678-20652898 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 1-216 |
| Cow position: | chr17:10769283-10769502 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-216 |
| Cow position: | chr17:30236421-30236208 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 1-218 |
| Cow position: | chr17:11655605-11655389 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 123, 187 |
| Conread position: | 1-221 |
| Cow position: | chr17:3619860-3620079 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 1-222 |
| Cow position: | chr17:23147645-23147427 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 123, 53 |
| Conread position: | 1-229 |
| Cow position: | chr17:33386648-33386420 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 1-233 |
| Cow position: | chr17:18173604-18173823 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 123, 94 |
| Conread position: | 1-239 |
| Cow position: | chr17:5166851-5167074 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 92 |
| Conread position: | 1-239 |
| Cow position: | chr17:7205646-7205409 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 1-239 |
| Cow position: | chr17:8279488-8279717 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 124, 39 |
| Conread position: | 1-239 |
| Cow position: | chr17:10271721-10271487 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 1-239 |
| Cow position: | chr17:23803682-23803450 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 1-239 |
| Cow position: | chr17:26162199-26162435 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 97, 71 |
| Conread position: | 1-239 |
| Cow position: | chr17:31798222-31798460 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 199, 214 |
| Conread position: | 2-124 |
| Cow position: | chr17:3813436-3813556 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 2-165 |
| Cow position: | chr17:9927584-9927420 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 2-175 |
| Cow position: | chr17:7163667-7163843 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 78, 92 |
| Conread position: | 2-179 |
| Cow position: | chr17:18829703-18829520 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 2-188 |
| Cow position: | chr17:14661320-14661498 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 2-208 |
| Cow position: | chr17:27505322-27505116 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 83, 72 |
| Conread position: | 2-221 |
| Cow position: | chr17:36400323-36400109 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 2-238 |
| Cow position: | chr17:4085980-4085748 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 3-175 |
| Cow position: | chr17:33925792-33925966 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 3-220 |
| Cow position: | chr17:27819516-27819302 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 3-238 |
| Cow position: | chr17:35387776-35388011 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 3-239 |
| Cow position: | chr17:18246290-18246069 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 204, 70 |
| Conread position: | 3-239 |
| Cow position: | chr17:32457346-32457577 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 122, 40 |
| Conread position: | 4-183 |
| Cow position: | chr17:8215411-8215236 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 4-186 |
| Cow position: | chr17:6996501-6996322 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 4-205 |
| Cow position: | chr17:36173743-36173950 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 4-211 |
| Cow position: | chr17:10314645-10314437 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 4-233 |
| Cow position: | chr17:20216390-20216164 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 4-238 |
| Cow position: | chr17:37414679-37414903 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 5-206 |
| Cow position: | chr17:12342260-12342460 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 5-218 |
| Cow position: | chr17:728138-728344 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 152, 31 |
| Conread position: | 5-233 |
| Cow position: | chr17:13229600-13229373 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 5-239 |
| Cow position: | chr17:143957-144187 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 135 |
| Conread position: | 5-239 |
| Cow position: | chr17:1455719-1455948 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 5-239 |
| Cow position: | chr17:7614154-7614391 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 5-239 |
| Cow position: | chr17:31465018-31465260 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 5-239 |
| Cow position: | chr17:38139731-38139497 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 120, 52 |
| Conread position: | 6-227 |
| Cow position: | chr17:33903702-33903918 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 7-228 |
| Cow position: | chr17:37778414-37778618 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 9-239 |
| Cow position: | chr17:37138972-37138751 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 10-216 |
| Cow position: | chr17:34870301-34870091 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 10-239 |
| Cow position: | chr17:24880958-24880732 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 117, 161 |
| Conread position: | 11-205 |
| Cow position: | chr17:14278280-14278086 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 93, 84 |
| Conread position: | 11-239 |
| Cow position: | chr17:9748959-9748736 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 12-225 |
| Cow position: | chr17:10221065-10220854 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 68, 87 |
| Conread position: | 13-209 |
| Cow position: | chr17:1328812-1328614 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 14-227 |
| Cow position: | chr17:39016311-39016098 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 15-116 |
| Cow position: | chr17:43640735-43640839 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 18-181 |
| Cow position: | chr17:3706428-3706590 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 18-197 |
| Cow position: | chr17:13600767-13600953 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 51 |
| Conread position: | 18-239 |
| Cow position: | chr17:35212566-35212358 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 77 |
| Conread position: | 19-208 |
| Cow position: | chr17:40815554-40815743 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 86, 111 |
| Conread position: | 19-209 |
| Cow position: | chr17:5381160-5380977 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 89 |
| Conread position: | 19-239 |
| Cow position: | chr17:36216977-36217190 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 20-221 |
| Cow position: | chr17:18887573-18887759 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 20-239 |
| Cow position: | chr17:5360245-5360448 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 22-175 |
| Cow position: | chr17:5041200-5041354 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 102, 122 |
| Conread position: | 23-239 |
| Cow position: | chr17:13715830-13716047 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 23-239 |
| Cow position: | chr17:27257013-27257240 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 27-224 |
| Cow position: | chr17:33913373-33913573 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 28-218 |
| Cow position: | chr17:7595351-7595164 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 30-239 |
| Cow position: | chr17:21373872-21373669 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 33-233 |
| Cow position: | chr17:19891819-19891618 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 50-239 |
| Cow position: | chr17:8926039-8926224 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 62-239 |
| Cow position: | chr17:18568771-18568942 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 62-239 |
| Cow position: | chr17:41891895-41892074 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 66-238 |
| Cow position: | chr17:8293617-8293791 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 147 |
Show alignments to all cow chromosomes.