Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-189 |
| Cow position: | chr18:48717792-48717973 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 124, 36 |
| Conread position: | 1-198 |
| Cow position: | chr18:44493332-44493527 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 123, 168 |
| Conread position: | 1-201 |
| Cow position: | chr18:26842945-26843146 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 19 |
| Conread position: | 1-205 |
| Cow position: | chr18:26373074-26372869 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-226 |
| Cow position: | chr18:40202657-40202877 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 135, 94 |
| Conread position: | 1-227 |
| Cow position: | chr18:6158062-6157843 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 1-227 |
| Cow position: | chr18:38126296-38126521 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 94 |
| Conread position: | 1-233 |
| Cow position: | chr18:16841898-16842139 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1-238 |
| Cow position: | chr18:16448692-16448474 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-239 |
| Cow position: | chr18:1190568-1190803 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 126, 137 |
| Conread position: | 1-239 |
| Cow position: | chr18:9155043-9154802 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 143 |
| Conread position: | 1-239 |
| Cow position: | chr18:20126954-20127190 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 123, 37 |
| Conread position: | 1-239 |
| Cow position: | chr18:22411459-22411697 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 1-239 |
| Cow position: | chr18:34021540-34021303 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 1-239 |
| Cow position: | chr18:37331374-37331609 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 155 |
| Conread position: | 1-239 |
| Cow position: | chr18:40893427-40893193 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 125, 168 |
| Conread position: | 2-120 |
| Cow position: | chr18:15267837-15267955 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-139 |
| Cow position: | chr18:23652261-23652400 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-205 |
| Cow position: | chr18:10687444-10687648 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 2-216 |
| Cow position: | chr18:33842931-33843149 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 2-227 |
| Cow position: | chr18:10101638-10101418 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 122, 28 |
| Conread position: | 2-232 |
| Cow position: | chr18:50700837-50700610 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 122, 93 |
| Conread position: | 2-234 |
| Cow position: | chr18:23714718-23714964 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 2-239 |
| Cow position: | chr18:15831450-15831675 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 2-239 |
| Cow position: | chr18:51271592-51271837 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 103, 239 |
| Conread position: | 3-148 |
| Cow position: | chr18:28794987-28794843 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 3-165 |
| Cow position: | chr18:4378915-4378756 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 3-166 |
| Cow position: | chr18:29949896-29949737 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 56 |
| Conread position: | 3-211 |
| Cow position: | chr18:51537535-51537737 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 3-233 |
| Cow position: | chr18:43712198-43711969 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 125, 81 |
| Conread position: | 3-239 |
| Cow position: | chr18:19364084-19363853 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 4-131 |
| Cow position: | chr18:4890903-4890778 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 4-175 |
| Cow position: | chr18:39503550-39503720 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 120, 91 |
| Conread position: | 4-183 |
| Cow position: | chr18:48036968-48036789 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 4-226 |
| Cow position: | chr18:45961122-45961343 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 4-234 |
| Cow position: | chr18:26334655-26334890 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 120, 84 |
| Conread position: | 4-238 |
| Cow position: | chr18:55696877-55697104 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 4-239 |
| Cow position: | chr18:9806570-9806335 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 102, 63 |
| Conread position: | 4-239 |
| Cow position: | chr18:34324799-34325035 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 4-239 |
| Cow position: | chr18:46873718-46873945 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-237 |
| Cow position: | chr18:51587398-51587624 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 120, 71 |
| Conread position: | 5-239 |
| Cow position: | chr18:35797760-35797542 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 6-198 |
| Cow position: | chr18:35767317-35767129 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 75 |
| Conread position: | 6-238 |
| Cow position: | chr18:2438618-2438847 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 7-180 |
| Cow position: | chr18:28297717-28297889 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 7-239 |
| Cow position: | chr18:51298627-51298397 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 99 |
| Conread position: | 10-237 |
| Cow position: | chr18:5756123-5755899 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 114, 141 |
| Conread position: | 10-237 |
| Cow position: | chr18:11362394-11362171 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 143 |
| Conread position: | 11-208 |
| Cow position: | chr18:4578344-4578540 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 13-225 |
| Cow position: | chr18:43113807-43114013 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 112, 70 |
| Conread position: | 18-239 |
| Cow position: | chr18:15689424-15689202 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 9, 170 |
| Conread position: | 20-228 |
| Cow position: | chr18:248680-248886 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 100, 164 |
| Conread position: | 22-202 |
| Cow position: | chr18:30566426-30566603 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 23-239 |
| Cow position: | chr18:16726780-16726566 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 101, 147 |
| Conread position: | 24-232 |
| Cow position: | chr18:44400577-44400372 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 131 |
| Conread position: | 24-239 |
| Cow position: | chr18:42061206-42060991 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 26-239 |
| Cow position: | chr18:21706055-21706262 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 98, 150 |
| Conread position: | 27-239 |
| Cow position: | chr18:24855716-24855928 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 93, 188 |
| Conread position: | 32-230 |
| Cow position: | chr18:1495426-1495228 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 189 |
| Conread position: | 33-206 |
| Cow position: | chr18:48458796-48458622 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 156 |
| Conread position: | 33-208 |
| Cow position: | chr18:32909169-32908995 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 34-239 |
| Cow position: | chr18:25970521-25970717 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 36-234 |
| Cow position: | chr18:16298224-16298022 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 37-165 |
| Cow position: | chr18:44408536-44408406 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 44-227 |
| Cow position: | chr18:21681868-21682046 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 45-239 |
| Cow position: | chr18:32773988-32773794 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 48-205 |
| Cow position: | chr18:25002783-25002940 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 55-239 |
| Cow position: | chr18:16134214-16134397 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 81-239 |
| Cow position: | chr18:213463-213622 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 107-224 |
| Cow position: | chr18:51002491-51002606 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 111-239 |
| Cow position: | chr18:34006995-34006867 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 59 |
Show alignments to all cow chromosomes.