Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-154 |
| Cow position: | chr21:23974026-23974179 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 70 |
| Conread position: | 1-158 |
| Cow position: | chr21:30053170-30053329 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 102 |
| Conread position: | 1-184 |
| Cow position: | chr21:2413299-2413119 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 126, 39 |
| Conread position: | 1-186 |
| Cow position: | chr21:17806889-17807069 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 1-218 |
| Cow position: | chr21:8671641-8671431 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 1-223 |
| Cow position: | chr21:8207025-8206801 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 1-224 |
| Cow position: | chr21:45356084-45355863 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 123, 202 |
| Conread position: | 1-226 |
| Cow position: | chr21:7483105-7483325 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 1-228 |
| Cow position: | chr21:11675803-11676027 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 123, 154 |
| Conread position: | 1-228 |
| Cow position: | chr21:13358579-13358347 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 123, 156 |
| Conread position: | 1-229 |
| Cow position: | chr21:3254402-3254172 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 121, 140 |
| Conread position: | 1-236 |
| Cow position: | chr21:17428746-17428514 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 1-237 |
| Cow position: | chr21:34740095-34739858 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 113, 215 |
| Conread position: | 1-238 |
| Cow position: | chr21:37235632-37235398 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 1-238 |
| Cow position: | chr21:39528758-39528528 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 1-239 |
| Cow position: | chr21:4099116-4098884 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 123, 40 |
| Conread position: | 1-239 |
| Cow position: | chr21:6316460-6316229 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 33 |
| Conread position: | 1-239 |
| Cow position: | chr21:8420867-8420637 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 1-239 |
| Cow position: | chr21:15741833-15742077 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 207 |
| Conread position: | 1-239 |
| Cow position: | chr21:44754539-44754765 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-239 |
| Cow position: | chr21:47823013-47823262 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 2-176 |
| Cow position: | chr21:22398397-22398236 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 38 |
| Conread position: | 2-185 |
| Cow position: | chr21:25800644-25800465 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 2-201 |
| Cow position: | chr21:27480692-27480498 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 2-229 |
| Cow position: | chr21:32574970-32574749 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 180, 93 |
| Conread position: | 2-239 |
| Cow position: | chr21:9939943-9940176 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 122, 11 |
| Conread position: | 2-239 |
| Cow position: | chr21:31576737-31576509 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 2-239 |
| Cow position: | chr21:31662248-31662017 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 127, 38 |
| Conread position: | 3-149 |
| Cow position: | chr21:6012665-6012812 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 3-164 |
| Cow position: | chr21:44220613-44220449 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 3-166 |
| Cow position: | chr21:49661593-49661751 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 11 |
| Conread position: | 3-219 |
| Cow position: | chr21:37120963-37121176 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 3-223 |
| Cow position: | chr21:47715297-47715518 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 91 |
| Conread position: | 3-225 |
| Cow position: | chr21:31004426-31004646 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 3-236 |
| Cow position: | chr21:22352989-22353219 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 102, 185 |
| Conread position: | 3-238 |
| Cow position: | chr21:4723729-4723493 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 3-239 |
| Cow position: | chr21:9353696-9353458 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 3-239 |
| Cow position: | chr21:12301263-12301502 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 97, 71 |
| Conread position: | 3-239 |
| Cow position: | chr21:18941586-18941822 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 98, 212 |
| Conread position: | 3-239 |
| Cow position: | chr21:33947007-33947241 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 4-177 |
| Cow position: | chr21:26147325-26147151 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 120, 149 |
| Conread position: | 4-200 |
| Cow position: | chr21:24674962-24674770 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 120, 11 |
| Conread position: | 4-228 |
| Cow position: | chr21:31662713-31662489 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 4-232 |
| Cow position: | chr21:6696770-6697012 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 213 |
| Conread position: | 4-233 |
| Cow position: | chr21:13755028-13754801 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 4-237 |
| Cow position: | chr21:13737294-13737066 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 4-239 |
| Cow position: | chr21:39509142-39509375 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 81 |
| Conread position: | 5-175 |
| Cow position: | chr21:41197806-41197970 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-216 |
| Cow position: | chr21:25286760-25286551 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 118, 90 |
| Conread position: | 6-226 |
| Cow position: | chr21:21223526-21223309 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 6-238 |
| Cow position: | chr21:46607349-46607573 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 6-239 |
| Cow position: | chr21:23397607-23397834 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 6-239 |
| Cow position: | chr21:23800888-23801114 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 9-208 |
| Cow position: | chr21:13417997-13418188 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 115, 31 |
| Conread position: | 9-239 |
| Cow position: | chr21:34564977-34565198 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 11-187 |
| Cow position: | chr21:23397425-23397599 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 11-234 |
| Cow position: | chr21:15239517-15239301 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 11-236 |
| Cow position: | chr21:18379083-18378857 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 140 |
| Conread position: | 14-239 |
| Cow position: | chr21:21181414-21181191 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 111, 76 |
| Conread position: | 14-239 |
| Cow position: | chr21:36371718-36371500 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 14-239 |
| Cow position: | chr21:49649853-49649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 19-200 |
| Cow position: | chr21:12087828-12087639 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 166 |
| Conread position: | 19-218 |
| Cow position: | chr21:19859938-19860135 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 19-239 |
| Cow position: | chr21:4276371-4276585 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 29-239 |
| Cow position: | chr21:35997394-35997188 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 95, 126 |
| Conread position: | 33-225 |
| Cow position: | chr21:26753709-26753516 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 30 |
| Conread position: | 40-239 |
| Cow position: | chr21:23768081-23767883 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 40-239 |
| Cow position: | chr21:23786242-23786044 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 51-239 |
| Cow position: | chr21:24698681-24698492 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 55-174 |
| Cow position: | chr21:44789158-44789278 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 81-239 |
| Cow position: | chr21:32903984-32904142 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 97-228 |
| Cow position: | chr21:38774344-38774210 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 53 |
Show alignments to all cow chromosomes.