Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-180 |
| Cow position: | chr24:41458275-41458104 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 1-184 |
| Cow position: | chr24:27912889-27912707 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 1-216 |
| Cow position: | chr24:7079944-7079727 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-217 |
| Cow position: | chr24:2964480-2964686 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-227 |
| Cow position: | chr24:42942957-42943184 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 1-234 |
| Cow position: | chr24:10546225-10546001 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 126, 14 |
| Conread position: | 1-237 |
| Cow position: | chr24:2143911-2143680 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 109, 97 |
| Conread position: | 1-237 |
| Cow position: | chr24:32758600-32758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 123, 87 |
| Conread position: | 1-239 |
| Cow position: | chr24:2970445-2970680 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 113 |
| Conread position: | 1-239 |
| Cow position: | chr24:19754740-19754500 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 1-239 |
| Cow position: | chr24:27054569-27054334 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 1-239 |
| Cow position: | chr24:36801542-36801305 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 2-185 |
| Cow position: | chr24:42916227-42916400 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 36 |
| Conread position: | 2-186 |
| Cow position: | chr24:22939848-22939669 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 2-188 |
| Cow position: | chr24:36497575-36497757 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 122, 136 |
| Conread position: | 2-219 |
| Cow position: | chr24:14337889-14337677 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 205, 77 |
| Conread position: | 2-237 |
| Cow position: | chr24:32822615-32822845 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 100 |
| Conread position: | 2-238 |
| Cow position: | chr24:30860795-30860564 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 2-239 |
| Cow position: | chr24:22888753-22888515 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 2-239 |
| Cow position: | chr24:39350065-39350292 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 122, 12 |
| Conread position: | 3-145 |
| Cow position: | chr24:6246228-6246372 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-158 |
| Cow position: | chr24:41332423-41332579 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 3-218 |
| Cow position: | chr24:28335404-28335618 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 122, 12 |
| Conread position: | 3-218 |
| Cow position: | chr24:33290160-33290369 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 121, 68 |
| Conread position: | 3-225 |
| Cow position: | chr24:23824273-23824484 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 3-228 |
| Cow position: | chr24:14746804-14746583 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 3-238 |
| Cow position: | chr24:15617315-15617548 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 3-239 |
| Cow position: | chr24:6507607-6507843 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 155 |
| Conread position: | 3-239 |
| Cow position: | chr24:32158115-32158349 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 153 |
| Conread position: | 4-147 |
| Cow position: | chr24:15909780-15909635 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 4-186 |
| Cow position: | chr24:16481154-16481326 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 94 |
| Conread position: | 4-186 |
| Cow position: | chr24:38292014-38291837 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 4-217 |
| Cow position: | chr24:6427862-6427652 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 4-238 |
| Cow position: | chr24:35827902-35827662 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 4-239 |
| Cow position: | chr24:31258181-31258410 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 121, 32 |
| Conread position: | 5-167 |
| Cow position: | chr24:4785517-4785679 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 119, 18 |
| Conread position: | 5-203 |
| Cow position: | chr24:44074301-44074495 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 5-215 |
| Cow position: | chr24:16055354-16055563 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 122, 9 |
| Conread position: | 5-215 |
| Cow position: | chr24:29389394-29389177 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 5-218 |
| Cow position: | chr24:28279781-28279569 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 5-238 |
| Cow position: | chr24:17981343-17981117 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 5-239 |
| Cow position: | chr24:18786771-18786993 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 57 |
| Conread position: | 6-239 |
| Cow position: | chr24:34368850-34369081 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 7-222 |
| Cow position: | chr24:28349739-28349517 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 198 |
| Conread position: | 9-239 |
| Cow position: | chr24:37945473-37945705 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 10-193 |
| Cow position: | chr24:12136294-12136110 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 11-239 |
| Cow position: | chr24:31378900-31378682 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 14-239 |
| Cow position: | chr24:24311651-24311431 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 17-228 |
| Cow position: | chr24:1438123-1438336 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 200 |
| Conread position: | 18-201 |
| Cow position: | chr24:25165180-25164995 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 19-158 |
| Cow position: | chr24:44929493-44929353 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 19-236 |
| Cow position: | chr24:14617801-14617584 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 19-239 |
| Cow position: | chr24:26455985-26455766 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 26-209 |
| Cow position: | chr24:23176563-23176744 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 26-218 |
| Cow position: | chr24:39742952-39742760 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 146 |
| Conread position: | 33-239 |
| Cow position: | chr24:39681980-39681780 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 42-201 |
| Cow position: | chr24:12452905-12452746 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-239 |
| Cow position: | chr24:19612127-19611936 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 49-215 |
| Cow position: | chr24:39474289-39474463 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 49-239 |
| Cow position: | chr24:11201533-11201718 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 62-239 |
| Cow position: | chr24:11456740-11456913 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 64-239 |
| Cow position: | chr24:32085833-32086005 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 67-234 |
| Cow position: | chr24:12263617-12263781 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 58 |
Show alignments to all cow chromosomes.