Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-154 |
| Cow position: | chr28:15496820-15496970 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:17624980-17625140 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-170 |
| Cow position: | chr28:3940001-3940175 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 1-200 |
| Cow position: | chr28:31373296-31373100 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 124, 42 |
| Conread position: | 1-216 |
| Cow position: | chr28:8789343-8789132 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 141 |
| Conread position: | 1-222 |
| Cow position: | chr28:1608381-1608159 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 1-227 |
| Cow position: | chr28:4764068-4763843 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 80, 51 |
| Conread position: | 1-228 |
| Cow position: | chr28:9294301-9294529 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 123, 198 |
| Conread position: | 1-230 |
| Cow position: | chr28:17362409-17362638 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 171 |
| Conread position: | 1-232 |
| Cow position: | chr28:14508176-14508408 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 1-234 |
| Cow position: | chr28:3769473-3769707 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 1-237 |
| Cow position: | chr28:31165791-31166028 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-239 |
| Cow position: | chr28:6643089-6643328 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 75, 209 |
| Conread position: | 1-239 |
| Cow position: | chr28:6993426-6993655 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 126, 72 |
| Conread position: | 1-239 |
| Cow position: | chr28:19253669-19253435 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 124, 42 |
| Conread position: | 2-163 |
| Cow position: | chr28:34749926-34749763 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 2-239 |
| Cow position: | chr28:19564026-19564276 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 70, 237 |
| Conread position: | 2-239 |
| Cow position: | chr28:21570366-21570143 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 41 |
| Conread position: | 2-239 |
| Cow position: | chr28:23007533-23007778 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 70, 232 |
| Conread position: | 3-179 |
| Cow position: | chr28:15406243-15406073 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 3-217 |
| Cow position: | chr28:19217020-19216795 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 161 |
| Conread position: | 3-218 |
| Cow position: | chr28:24500396-24500178 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 82, 93 |
| Conread position: | 3-223 |
| Cow position: | chr28:25825676-25825893 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 121, 104 |
| Conread position: | 3-223 |
| Cow position: | chr28:26719538-26719314 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 69, 212 |
| Conread position: | 3-228 |
| Cow position: | chr28:5474843-5475065 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 123, 92 |
| Conread position: | 3-229 |
| Cow position: | chr28:5406731-5406524 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 214, 40 |
| Conread position: | 3-238 |
| Cow position: | chr28:1202058-1202285 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 124, 11 |
| Conread position: | 4-140 |
| Cow position: | chr28:24700961-24700823 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 4-181 |
| Cow position: | chr28:3822953-3823125 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 120, 91 |
| Conread position: | 4-204 |
| Cow position: | chr28:17345679-17345879 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 4-236 |
| Cow position: | chr28:15081738-15081959 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 4-239 |
| Cow position: | chr28:4274657-4274887 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 121, 68 |
| Conread position: | 4-239 |
| Cow position: | chr28:11500704-11500931 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 5-217 |
| Cow position: | chr28:23668598-23668807 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 5-239 |
| Cow position: | chr28:7539971-7540204 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 75 |
| Conread position: | 8-239 |
| Cow position: | chr28:9237498-9237270 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 8-239 |
| Cow position: | chr28:20275312-20275082 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 35 |
| Conread position: | 9-205 |
| Cow position: | chr28:23703589-23703393 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 9-239 |
| Cow position: | chr28:11180982-11181209 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 11-208 |
| Cow position: | chr28:5980098-5979906 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 11-225 |
| Cow position: | chr28:15678068-15677851 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 11-239 |
| Cow position: | chr28:33284928-33285158 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 94, 98 |
| Conread position: | 11-239 |
| Cow position: | chr28:34198928-34199152 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 13-237 |
| Cow position: | chr28:9176580-9176797 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 14-239 |
| Cow position: | chr28:12999272-12999050 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 15-226 |
| Cow position: | chr28:18934631-18934419 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 18-239 |
| Cow position: | chr28:13866016-13865799 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 19-201 |
| Cow position: | chr28:16041051-16041227 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 122 |
| Conread position: | 19-223 |
| Cow position: | chr28:20963355-20963561 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 22-233 |
| Cow position: | chr28:11007369-11007157 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 24-237 |
| Cow position: | chr28:7157003-7156791 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 38 |
| Conread position: | 25-238 |
| Cow position: | chr28:17601707-17601919 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 99, 184 |
| Conread position: | 33-205 |
| Cow position: | chr28:25340429-25340259 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 36-228 |
| Cow position: | chr28:8336118-8335925 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 40-228 |
| Cow position: | chr28:7805269-7805458 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 47-213 |
| Cow position: | chr28:21873906-21873738 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 66-234 |
| Cow position: | chr28:12046786-12046956 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 98-239 |
| Cow position: | chr28:16687122-16686979 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.