Cow genome map
| Conread name: | unkn-09A08GT3 |
| Conread position: | 1-96 |
| Cow position: | chr29:19189567-19189472 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-132 |
| Cow position: | chr29:6149933-6150064 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 1-140 |
| Cow position: | chr29:21534263-21534401 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 45 |
| Conread position: | 1-149 |
| Cow position: | chr29:19674-19526 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 1-176 |
| Cow position: | chr29:21174522-21174696 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 83 |
| Conread position: | 1-177 |
| Cow position: | chr29:11071502-11071680 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 1-179 |
| Cow position: | chr29:18021497-18021678 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-217 |
| Cow position: | chr29:10318790-10318568 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 73, 199 |
| Conread position: | 1-227 |
| Cow position: | chr29:35442277-35442505 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-234 |
| Cow position: | chr29:11766899-11766681 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-237 |
| Cow position: | chr29:21186689-21186923 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 121, 88 |
| Conread position: | 1-239 |
| Cow position: | chr29:356509-356268 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 1-239 |
| Cow position: | chr29:1340966-1340731 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 1-239 |
| Cow position: | chr29:5616683-5616921 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 124, 215 |
| Conread position: | 1-239 |
| Cow position: | chr29:6208245-6208013 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1-239 |
| Cow position: | chr29:11366418-11366185 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-239 |
| Cow position: | chr29:11677278-11677509 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 1-239 |
| Cow position: | chr29:13634116-13634352 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 1-239 |
| Cow position: | chr29:29302478-29302711 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 37 |
| Conread position: | 2-120 |
| Cow position: | chr29:36085366-36085249 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 2-149 |
| Cow position: | chr29:42686534-42686683 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-154 |
| Cow position: | chr29:32080730-32080577 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 2-165 |
| Cow position: | chr29:943007-942839 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 2-176 |
| Cow position: | chr29:23742082-23742254 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 60 |
| Conread position: | 2-200 |
| Cow position: | chr29:2274661-2274855 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 38 |
| Conread position: | 2-239 |
| Cow position: | chr29:4691205-4691444 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 3-163 |
| Cow position: | chr29:30544242-30544403 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 3-189 |
| Cow position: | chr29:27688560-27688743 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 42 |
| Conread position: | 3-191 |
| Cow position: | chr29:21012163-21012348 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 3-229 |
| Cow position: | chr29:18073119-18072899 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 3-238 |
| Cow position: | chr29:15940455-15940684 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-239 |
| Cow position: | chr29:7663091-7663323 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-239 |
| Cow position: | chr29:26318035-26317798 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 102, 219 |
| Conread position: | 3-239 |
| Cow position: | chr29:29559539-29559773 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 3-239 |
| Cow position: | chr29:30350748-30350986 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:9662197-9662036 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:8862299-8862461 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 4-178 |
| Cow position: | chr29:44135156-44135330 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 113, 10 |
| Conread position: | 4-183 |
| Cow position: | chr29:19607344-19607523 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 120, 11 |
| Conread position: | 4-200 |
| Cow position: | chr29:708950-709149 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 4-205 |
| Cow position: | chr29:41083322-41083128 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 121, 28 |
| Conread position: | 4-235 |
| Cow position: | chr29:10153611-10153845 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 158 |
| Conread position: | 4-237 |
| Cow position: | chr29:18541228-18541007 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 201, 124 |
| Conread position: | 4-239 |
| Cow position: | chr29:11005911-11005680 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 5-163 |
| Cow position: | chr29:3050349-3050192 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 5-204 |
| Cow position: | chr29:44550686-44550477 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 90 |
| Conread position: | 5-233 |
| Cow position: | chr29:942801-942584 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 5-237 |
| Cow position: | chr29:18963915-18963681 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 5-237 |
| Cow position: | chr29:26299150-26298923 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 100, 152 |
| Conread position: | 5-239 |
| Cow position: | chr29:6772312-6772081 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 5-239 |
| Cow position: | chr29:21265941-21265709 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 6-154 |
| Cow position: | chr29:8794533-8794381 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 6-239 |
| Cow position: | chr29:39023158-39023402 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 11-169 |
| Cow position: | chr29:15042619-15042465 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 11-200 |
| Cow position: | chr29:7407730-7407915 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 113, 59 |
| Conread position: | 12-217 |
| Cow position: | chr29:40337368-40337570 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 13-239 |
| Cow position: | chr29:26985400-26985173 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 111, 209 |
| Conread position: | 14-239 |
| Cow position: | chr29:7054582-7054365 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 14-239 |
| Cow position: | chr29:9512427-9512207 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 14-239 |
| Cow position: | chr29:21675562-21675343 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 14-239 |
| Cow position: | chr29:22895899-22895672 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 14-239 |
| Cow position: | chr29:37960806-37961030 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 203, 48 |
| Conread position: | 15-239 |
| Cow position: | chr29:4367894-4367671 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 19-228 |
| Cow position: | chr29:4444885-4444674 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 32-239 |
| Cow position: | chr29:14758709-14758913 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 125 |
| Conread position: | 34-237 |
| Cow position: | chr29:25426507-25426706 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 35-229 |
| Cow position: | chr29:13554288-13554098 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 126 |
| Conread position: | 55-228 |
| Cow position: | chr29:25923831-25924005 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 60-237 |
| Cow position: | chr29:16055006-16055179 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 76-238 |
| Cow position: | chr29:19897719-19897557 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 56 |
Show alignments to all cow chromosomes.