Cow genome map
| Conread name: | unkn-12-11 |
| Conread position: | 1-148 |
| Cow position: | chr17:20231305-20231452 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 12 |
| Conread position: | 7-170 |
| Cow position: | chr17:2077501-2077336 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 7-170 |
| Cow position: | chr17:4346088-4345923 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 7-193 |
| Cow position: | chr17:1786475-1786295 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 103, 74 |
| Conread position: | 7-193 |
| Cow position: | chr17:11086236-11086052 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 99, 166 |
| Conread position: | 12-193 |
| Cow position: | chr17:15852189-15852368 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 161 |
| Conread position: | 12-194 |
| Cow position: | chr17:5228118-5228297 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 102, 160 |
| Conread position: | 15-193 |
| Cow position: | chr17:53578-53400 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 16-193 |
| Cow position: | chr17:20414960-20414785 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 157 |
| Conread position: | 16-193 |
| Cow position: | chr17:34574243-34574418 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 91, 155 |
| Conread position: | 20-146 |
| Cow position: | chr17:6070047-6070175 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 20-146 |
| Cow position: | chr17:14241009-14241136 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 62 |
| Conread position: | 20-158 |
| Cow position: | chr17:3654785-3654643 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 20-164 |
| Cow position: | chr17:2246582-2246436 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 20-167 |
| Cow position: | chr17:2263643-2263792 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 20-167 |
| Cow position: | chr17:9079916-9079768 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 20-167 |
| Cow position: | chr17:11784371-11784520 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 20-167 |
| Cow position: | chr17:13967430-13967579 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 20-191 |
| Cow position: | chr17:22561401-22561566 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 20-192 |
| Cow position: | chr17:16121103-16120931 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 154 |
| Conread position: | 20-192 |
| Cow position: | chr17:20086270-20086102 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 14 |
| Conread position: | 20-192 |
| Cow position: | chr17:20098973-20098809 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 20-193 |
| Cow position: | chr17:136132-136303 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:183075-183246 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 89, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:3640401-3640230 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:6121289-6121461 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 73, 154 |
| Conread position: | 20-193 |
| Cow position: | chr17:6261363-6261534 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 20-193 |
| Cow position: | chr17:14936467-14936299 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 20-193 |
| Cow position: | chr17:15326783-15326956 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:17257186-17257015 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:19267341-19267170 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:19980632-19980464 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 87, 120 |
| Conread position: | 20-193 |
| Cow position: | chr17:20403924-20404091 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 20-193 |
| Cow position: | chr17:23322944-23322773 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:24028499-24028330 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 132 |
| Conread position: | 20-193 |
| Cow position: | chr17:27793279-27793108 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 153 |
| Conread position: | 20-193 |
| Cow position: | chr17:28027000-28026832 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 20-193 |
| Cow position: | chr17:34157626-34157796 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 113 |
| Conread position: | 20-194 |
| Cow position: | chr17:15372716-15372880 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 20-200 |
| Cow position: | chr17:29302261-29302440 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 119 |
| Conread position: | 21-193 |
| Cow position: | chr17:39945-40115 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 150 |
| Conread position: | 21-193 |
| Cow position: | chr17:15141852-15141682 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 88, 119 |
| Conread position: | 21-193 |
| Cow position: | chr17:39049720-39049892 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 152 |
| Conread position: | 21-193 |
| Cow position: | chr17:45271614-45271444 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 150 |
| Conread position: | 21-198 |
| Cow position: | chr17:20489809-20489984 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 87, 150 |
| Conread position: | 24-161 |
| Cow position: | chr17:2175429-2175567 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 24-167 |
| Cow position: | chr17:2554767-2554622 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 24-193 |
| Cow position: | chr17:43990010-43990177 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 26-192 |
| Cow position: | chr17:40806317-40806482 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 83, 147 |
| Conread position: | 26-193 |
| Cow position: | chr17:15437294-15437459 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 26-193 |
| Cow position: | chr17:34159236-34159401 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 82, 142 |
| Conread position: | 28-193 |
| Cow position: | chr17:33284180-33284017 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 81, 142 |
| Conread position: | 51-192 |
| Cow position: | chr17:2581364-2581504 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 122 |
| Conread position: | 54-193 |
| Cow position: | chr17:8210179-8210316 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 119 |
| Conread position: | 68-192 |
| Cow position: | chr17:20080344-20080221 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 99 |
Show alignments to all cow chromosomes.