Cow genome map
| Conread name: | unkn-54-2 |
| Conread position: | 1-319 |
| Cow position: | chr11:11991102-11990789 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 8 |
| Conread position: | 3-306 |
| Cow position: | chr11:9153798-9154092 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 88 |
| Conread position: | 4-307 |
| Cow position: | chr11:35241766-35242066 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 87 |
| Conread position: | 4-315 |
| Cow position: | chr11:75402407-75402712 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 87 |
| Conread position: | 4-319 |
| Cow position: | chr11:36930431-36930728 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 87 |
| Conread position: | 5-145 |
| Cow position: | chr11:37346045-37345910 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-178 |
| Cow position: | chr11:63261105-63261274 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-194 |
| Cow position: | chr11:77033990-77034175 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-201 |
| Cow position: | chr11:21371979-21372171 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 161, 86 |
| Conread position: | 5-216 |
| Cow position: | chr11:8499168-8498962 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 172, 9 |
| Conread position: | 5-247 |
| Cow position: | chr11:68130504-68130274 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 164, 77 |
| Conread position: | 5-250 |
| Cow position: | chr11:30164672-30164432 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 35 |
| Conread position: | 5-257 |
| Cow position: | chr11:70030521-70030274 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-275 |
| Cow position: | chr11:5584344-5584601 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 163, 52 |
| Conread position: | 5-279 |
| Cow position: | chr11:30700596-30700325 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-293 |
| Cow position: | chr11:7229462-7229177 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-299 |
| Cow position: | chr11:21853149-21853442 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 86 |
| Conread position: | 5-303 |
| Cow position: | chr11:46780968-46781261 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 25 |
| Conread position: | 5-314 |
| Cow position: | chr11:30255540-30255229 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 5-314 |
| Cow position: | chr11:80591459-80591156 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 81 |
| Conread position: | 5-318 |
| Cow position: | chr11:71332604-71332293 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:5482344-5482654 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:9388439-9388129 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr11:10093971-10093664 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 60 |
| Conread position: | 5-319 |
| Cow position: | chr11:14259859-14260165 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:26068009-26068328 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 5-319 |
| Cow position: | chr11:26121818-26122129 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr11:32077681-32077991 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:41167592-41167903 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:43510873-43511180 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:49171391-49171707 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 5-319 |
| Cow position: | chr11:56463464-56463153 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:58139796-58139496 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-319 |
| Cow position: | chr11:63478953-63478642 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-322 |
| Cow position: | chr11:44255175-44254862 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 5-327 |
| Cow position: | chr11:40458278-40457957 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 83 |
| Conread position: | 8-164 |
| Cow position: | chr11:66858889-66859040 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 9-250 |
| Cow position: | chr11:4053254-4053475 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 218, 57 |
| Conread position: | 9-315 |
| Cow position: | chr11:7719417-7719720 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 82 |
| Conread position: | 9-319 |
| Cow position: | chr11:67295909-67296220 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 81 |
| Conread position: | 11-288 |
| Cow position: | chr11:23883443-23883169 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 79 |
| Conread position: | 13-285 |
| Cow position: | chr11:81316786-81317051 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 76 |
| Conread position: | 15-321 |
| Cow position: | chr11:44915589-44915898 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 76 |
| Conread position: | 16-303 |
| Cow position: | chr11:59368944-59369226 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 79 |
| Conread position: | 16-319 |
| Cow position: | chr11:17781939-17782236 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 41 |
| Conread position: | 18-176 |
| Cow position: | chr11:38842716-38842561 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 18-179 |
| Cow position: | chr11:70424479-70424324 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 18-306 |
| Cow position: | chr11:74928885-74928607 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 18-315 |
| Cow position: | chr11:44153994-44154283 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 72 |
| Conread position: | 18-319 |
| Cow position: | chr11:3796320-3796029 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 24 |
| Conread position: | 18-319 |
| Cow position: | chr11:12316981-12317279 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 72 |
| Conread position: | 18-319 |
| Cow position: | chr11:44106771-44106470 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 73 |
| Conread position: | 20-209 |
| Cow position: | chr11:9432467-9432288 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 20-255 |
| Cow position: | chr11:38069381-38069151 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 30-302 |
| Cow position: | chr11:77749141-77748876 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 60 |
| Conread position: | 31-307 |
| Cow position: | chr11:52128285-52128012 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 60 |
| Conread position: | 42-305 |
| Cow position: | chr11:65852092-65852352 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 48-303 |
| Cow position: | chr11:40133764-40134001 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 59-215 |
| Cow position: | chr11:43913576-43913411 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 76-319 |
| Cow position: | chr11:29616271-29616506 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 86-307 |
| Cow position: | chr11:33319094-33319317 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 92-247 |
| Cow position: | chr11:3999471-3999627 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 134, 74 |
| Conread position: | 96-318 |
| Cow position: | chr11:4675601-4675823 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 96-320 |
| Cow position: | chr11:81576892-81577115 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 96-321 |
| Cow position: | chr11:17279575-17279797 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 110-319 |
| Cow position: | chr11:24396334-24396126 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 50 |
Show alignments to all cow chromosomes.