Cow genome map
| Conread name: | unkn-54-2 |
| Conread position: | 4-167 |
| Cow position: | chr16:5844610-5844453 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 4-319 |
| Cow position: | chr16:25088315-25088000 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 5-189 |
| Cow position: | chr16:5350805-5350985 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-224 |
| Cow position: | chr16:53509824-53510036 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 164, 79 |
| Conread position: | 5-234 |
| Cow position: | chr16:39033642-39033856 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-244 |
| Cow position: | chr16:23810220-23809988 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 67 |
| Conread position: | 5-266 |
| Cow position: | chr16:5488574-5488318 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-295 |
| Cow position: | chr16:20378148-20377869 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 86 |
| Conread position: | 5-306 |
| Cow position: | chr16:49253549-49253835 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 36 |
| Conread position: | 5-313 |
| Cow position: | chr16:2480452-2480750 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 61 |
| Conread position: | 5-314 |
| Cow position: | chr16:56913535-56913835 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 86 |
| Conread position: | 5-315 |
| Cow position: | chr16:21018262-21017955 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 85 |
| Conread position: | 5-315 |
| Cow position: | chr16:37925282-37925579 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:41237-40926 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:417598-417287 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:1563685-1563996 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:1958024-1958327 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 5-319 |
| Cow position: | chr16:2408189-2408502 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:2724521-2724832 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:4426793-4426483 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:5435528-5435217 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:10440942-10440631 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:11633141-11633452 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:12160580-12160888 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:12535251-12535546 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:14351981-14352289 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:15570473-15570161 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:15979675-15979986 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:25454758-25455069 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:26666407-26666096 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:27730678-27730989 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:28206408-28206719 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:28468420-28468731 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:31585999-31586304 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 69 |
| Conread position: | 5-319 |
| Cow position: | chr16:37454781-37455085 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:37478158-37478468 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:41164071-41164379 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:41804754-41805049 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 170, 50 |
| Conread position: | 5-319 |
| Cow position: | chr16:43562693-43563003 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:43894558-43894870 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:44049221-44049532 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:48411338-48411027 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr16:49219250-49219557 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 25 |
| Conread position: | 5-319 |
| Cow position: | chr16:50712736-50713047 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr16:51087486-51087176 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-321 |
| Cow position: | chr16:13422221-13422532 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 52 |
| Conread position: | 8-319 |
| Cow position: | chr16:600121-599816 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 86 |
| Conread position: | 8-319 |
| Cow position: | chr16:23249255-23249577 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 8-319 |
| Cow position: | chr16:25344679-25344370 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 8-319 |
| Cow position: | chr16:25444576-25444270 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 8-319 |
| Cow position: | chr16:45704097-45704400 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 11-319 |
| Cow position: | chr16:2233029-2233334 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 80 |
| Conread position: | 15-319 |
| Cow position: | chr16:41515824-41515524 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 65 |
| Conread position: | 16-315 |
| Cow position: | chr16:20204692-20204400 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 14 |
| Conread position: | 18-158 |
| Cow position: | chr16:2224260-2224394 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-219 |
| Cow position: | chr16:15409395-15409596 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 72 |
| Conread position: | 18-285 |
| Cow position: | chr16:45559983-45559731 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 73 |
| Conread position: | 18-303 |
| Cow position: | chr16:18745348-18745622 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 67 |
| Conread position: | 18-315 |
| Cow position: | chr16:15255792-15256074 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 73 |
| Conread position: | 18-319 |
| Cow position: | chr16:45534152-45533854 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 73 |
| Conread position: | 19-319 |
| Cow position: | chr16:45609098-45608807 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 72 |
| Conread position: | 20-307 |
| Cow position: | chr16:8481938-8482216 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 48 |
| Conread position: | 20-315 |
| Cow position: | chr16:7155289-7154996 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 15 |
| Conread position: | 20-319 |
| Cow position: | chr16:5756616-5756331 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 71 |
| Conread position: | 21-243 |
| Cow position: | chr16:5726078-5725860 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 52 |
| Conread position: | 21-319 |
| Cow position: | chr16:4398940-4398641 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 111, 70 |
| Conread position: | 22-315 |
| Cow position: | chr16:701947-701657 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 69 |
| Conread position: | 24-294 |
| Cow position: | chr16:7457298-7457565 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 67 |
| Conread position: | 24-319 |
| Cow position: | chr16:15179373-15179074 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 183, 38 |
| Conread position: | 25-306 |
| Cow position: | chr16:3332586-3332313 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 66 |
| Conread position: | 32-319 |
| Cow position: | chr16:3769335-3769618 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 34-237 |
| Cow position: | chr16:20968278-20968474 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 44-217 |
| Cow position: | chr16:24702425-24702593 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 44-319 |
| Cow position: | chr16:4461648-4461919 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 46 |
| Conread position: | 54-307 |
| Cow position: | chr16:26500309-26500067 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 56-295 |
| Cow position: | chr16:49170332-49170563 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 103-295 |
| Cow position: | chr16:43801975-43801776 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 123-319 |
| Cow position: | chr16:19887609-19887413 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 103, 43 |
Show alignments to all cow chromosomes.