Cow genome map

Conread name: unkn-54-2

Conread position: 1-167
Cow position: chr3:76136639-76136478 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 8

Conread position: 1-277
Cow position: chr3:19794774-19795044 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 8

Conread position: 4-319
Cow position: chr3:12668017-12667710 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 62

Conread position: 4-319
Cow position: chr3:23204360-23204668 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 86

Conread position: 4-319
Cow position: chr3:78024118-78024424 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 86

Conread position: 5-210
Cow position: chr3:35056293-35056097 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 5-223
Cow position: chr3:53519120-53518905 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 164, 85

Conread position: 5-261
Cow position: chr3:59864796-59864547 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 85

Conread position: 5-272
Cow position: chr3:49907716-49907980 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 86

Conread position: 5-280
Cow position: chr3:75997572-75997840 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-293
Cow position: chr3:24572850-24573135 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-307
Cow position: chr3:49416530-49416830 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-309
Cow position: chr3:76000646-76000945 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 75

Conread position: 5-314
Cow position: chr3:13723395-13723701 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 86

Conread position: 5-314
Cow position: chr3:50204881-50204576 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 86

Conread position: 5-315
Cow position: chr3:40826713-40826408 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-318
Cow position: chr3:35619869-35619564 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 84

Conread position: 5-319
Cow position: chr3:2791068-2790757 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chr3:10243976-10243667 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:11384629-11384323 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 81

Conread position: 5-319
Cow position: chr3:12750214-12749906 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 5-319
Cow position: chr3:13275961-13276276 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 89

Conread position: 5-319
Cow position: chr3:14864199-14863890 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 86

Conread position: 5-319
Cow position: chr3:19753418-19753721 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:20999755-21000083 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 86

Conread position: 5-319
Cow position: chr3:24442786-24443089 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:24638722-24638417 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 166, 24

Conread position: 5-319
Cow position: chr3:30321573-30321263 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:31120820-31121131 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chr3:31422805-31423121 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 93

Conread position: 5-319
Cow position: chr3:36874744-36875055 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:38869883-38869579 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:42846661-42846354 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:43189953-43190264 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:47272562-47272874 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:48603569-48603257 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:49134220-49134531 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:56645014-56645325 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 87

Conread position: 5-319
Cow position: chr3:57481429-57481731 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 29

Conread position: 5-319
Cow position: chr3:60184854-60185177 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 88

Conread position: 5-319
Cow position: chr3:61677851-61677544 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 5-319
Cow position: chr3:64376394-64376704 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 87

Conread position: 5-319
Cow position: chr3:69930520-69930828 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 38

Conread position: 5-319
Cow position: chr3:72633389-72633079 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 25

Conread position: 5-319
Cow position: chr3:73450997-73451308 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr3:75038525-75038836 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chr3:81101395-81101084 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-325
Cow position: chr3:49605125-49605441 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 86

Conread position: 8-258
Cow position: chr3:13117748-13117986 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 218, 81

Conread position: 8-315
Cow position: chr3:49732483-49732785 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 49

Conread position: 8-319
Cow position: chr3:6864972-6864666 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 81

Conread position: 8-319
Cow position: chr3:72669246-72669556 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 82

Conread position: 9-185
Cow position: chr3:14724431-14724260 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 160, 48

Conread position: 9-190
Cow position: chr3:24432694-24432517 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 160, 81

Conread position: 9-307
Cow position: chr3:7245793-7246086 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 82

Conread position: 9-319
Cow position: chr3:49541895-49542195 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 81

Conread position: 15-314
Cow position: chr3:63000075-63000347 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 154, 57

Conread position: 15-319
Cow position: chr3:57555076-57554783 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 21

Conread position: 16-319
Cow position: chr3:39327851-39327554 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 75

Conread position: 18-243
Cow position: chr3:23217031-23217242 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 151, 12

Conread position: 18-314
Cow position: chr3:14680391-14680098 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 74

Conread position: 18-315
Cow position: chr3:24585927-24586220 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 73

Conread position: 18-319
Cow position: chr3:27454633-27454927 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 93

Conread position: 18-319
Cow position: chr3:34557074-34557364 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 48

Conread position: 18-319
Cow position: chr3:49387952-49387658 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 73

Conread position: 18-319
Cow position: chr3:56160522-56160811 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 73

Conread position: 18-319
Cow position: chr3:76187842-76187538 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 72

Conread position: 20-304
Cow position: chr3:6854325-6854606 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 72

Conread position: 20-319
Cow position: chr3:2904151-2904435 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 65

Conread position: 20-319
Cow position: chr3:25056988-25056695 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 71

Conread position: 20-319
Cow position: chr3:58950763-58950467 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 69

Conread position: 20-319
Cow position: chr3:66829639-66829933 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 11

Conread position: 22-319
Cow position: chr3:49463260-49463547 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 69

Conread position: 24-242
Cow position: chr3:34464665-34464450 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 142, 67

Conread position: 26-201
Cow position: chr3:37600030-37599861 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 62, 0

Conread position: 30-315
Cow position: chr3:58034352-58034627 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 33

Conread position: 30-319
Cow position: chr3:34116080-34116364 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 61

Conread position: 32-319
Cow position: chr3:21005101-21004821 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 59

Conread position: 47-319
Cow position: chr3:65989195-65988927 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 43

Conread position: 92-319
Cow position: chr3:13115202-13115431 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 96-305
Cow position: chr3:52664626-52664422 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 23

Conread position: 96-307
Cow position: chr3:61277797-61277580 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 114, 70

Conread position: 96-319
Cow position: chr3:56336728-56336952 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 121

Conread position: 96-319
Cow position: chr3:66623442-66623218 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 59

Conread position: 100-241
Cow position: chr3:45568458-45568314 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 102-307
Cow position: chr3:40004261-40004461 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 72

Conread position: 110-319
Cow position: chr3:5445700-5445906 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 59

Show alignments to all cow chromosomes.