Cow genome map
| Conread name: | unkn-54-2 |
| Conread position: | 4-306 |
| Cow position: | chr5:46626054-46626351 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 87 |
| Conread position: | 5-125 |
| Cow position: | chr5:14558236-14558351 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-156 |
| Cow position: | chr5:50923622-50923768 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 5-164 |
| Cow position: | chr5:39174021-39174175 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 5-166 |
| Cow position: | chr5:279958-280113 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-175 |
| Cow position: | chr5:7498763-7498929 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-184 |
| Cow position: | chr5:43437720-43437895 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-194 |
| Cow position: | chr5:7175520-7175335 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-198 |
| Cow position: | chr5:59782540-59782729 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-238 |
| Cow position: | chr5:14551379-14551609 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-247 |
| Cow position: | chr5:55722751-55722512 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 86 |
| Conread position: | 5-259 |
| Cow position: | chr5:75755795-75755556 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 164, 43 |
| Conread position: | 5-265 |
| Cow position: | chr5:25927204-25927473 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 52, 98 |
| Conread position: | 5-276 |
| Cow position: | chr5:34708991-34708723 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-280 |
| Cow position: | chr5:46707859-46707596 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 86 |
| Conread position: | 5-284 |
| Cow position: | chr5:27907246-27907516 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 50 |
| Conread position: | 5-314 |
| Cow position: | chr5:2977007-2976702 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 38 |
| Conread position: | 5-315 |
| Cow position: | chr5:21189440-21189136 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 5-319 |
| Cow position: | chr5:1338699-1339011 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:2917683-2917375 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 13 |
| Conread position: | 5-319 |
| Cow position: | chr5:3789445-3789139 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 5-319 |
| Cow position: | chr5:6151610-6151921 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:7396465-7396160 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 63 |
| Conread position: | 5-319 |
| Cow position: | chr5:10922067-10921756 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 80 |
| Conread position: | 5-319 |
| Cow position: | chr5:14636357-14636667 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 79 |
| Conread position: | 5-319 |
| Cow position: | chr5:18558187-18558493 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 38 |
| Conread position: | 5-319 |
| Cow position: | chr5:19978692-19979003 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:23353962-23353652 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 86 |
| Conread position: | 5-319 |
| Cow position: | chr5:24101872-24101561 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:41411217-41411527 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 23 |
| Conread position: | 5-319 |
| Cow position: | chr5:44709150-44709471 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:46676835-46676524 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:49117129-49117440 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 87 |
| Conread position: | 5-319 |
| Cow position: | chr5:54785886-54786197 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr5:55631286-55630975 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-321 |
| Cow position: | chr5:29742339-29742648 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-321 |
| Cow position: | chr5:62436345-62436032 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 8-293 |
| Cow position: | chr5:8178353-8178076 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 82 |
| Conread position: | 8-319 |
| Cow position: | chr5:24299232-24298924 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 8-319 |
| Cow position: | chr5:47560342-47560650 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 8-319 |
| Cow position: | chr5:48805242-48805540 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 82 |
| Conread position: | 8-321 |
| Cow position: | chr5:5937525-5937215 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 9-244 |
| Cow position: | chr5:24087832-24088066 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 151, 82 |
| Conread position: | 9-319 |
| Cow position: | chr5:17645864-17646172 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 87 |
| Conread position: | 11-167 |
| Cow position: | chr5:35180345-35180194 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 11-315 |
| Cow position: | chr5:47343089-47342789 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 79 |
| Conread position: | 11-318 |
| Cow position: | chr5:41391946-41391641 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 18-263 |
| Cow position: | chr5:21524262-21524012 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 151, 73 |
| Conread position: | 18-293 |
| Cow position: | chr5:31560461-31560182 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 63, 227 |
| Conread position: | 18-293 |
| Cow position: | chr5:68593632-68593370 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 151, 68 |
| Conread position: | 18-319 |
| Cow position: | chr5:59938-60235 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 148, 67 |
| Conread position: | 18-319 |
| Cow position: | chr5:5682302-5682600 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 73 |
| Conread position: | 19-247 |
| Cow position: | chr5:5715878-5716092 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 206, 72 |
| Conread position: | 20-319 |
| Cow position: | chr5:24643663-24643951 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 24-259 |
| Cow position: | chr5:41523788-41524029 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 137, 68 |
| Conread position: | 38-319 |
| Cow position: | chr5:65597614-65597342 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 43-230 |
| Cow position: | chr5:28223623-28223440 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 126, 26 |
| Conread position: | 43-319 |
| Cow position: | chr5:3544492-3544219 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 47 |
| Conread position: | 58-319 |
| Cow position: | chr5:26624661-26624905 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 61-319 |
| Cow position: | chr5:31098082-31098343 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 106, 5 |
| Conread position: | 64-249 |
| Cow position: | chr5:742584-742763 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 27 |
| Conread position: | 92-319 |
| Cow position: | chr5:54868169-54867941 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 196 |
| Conread position: | 96-284 |
| Cow position: | chr5:23667049-23667240 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 96-319 |
| Cow position: | chr5:6032121-6031895 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 102-230 |
| Cow position: | chr5:41980542-41980417 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 111-306 |
| Cow position: | chr5:39749900-39750096 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 173 |
Show alignments to all cow chromosomes.