Cow genome map
| Conread name: | unkn-54-2 |
| Conread position: | 1-319 |
| Cow position: | chr6:20451321-20451010 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 15 |
| Conread position: | 2-319 |
| Cow position: | chr6:50114038-50113734 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 3-319 |
| Cow position: | chr6:11638843-11639149 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 77 |
| Conread position: | 4-319 |
| Cow position: | chr6:5946413-5946725 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 86 |
| Conread position: | 5-192 |
| Cow position: | chr6:32664741-32664924 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 162, 86 |
| Conread position: | 5-202 |
| Cow position: | chr6:27887272-27887080 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 164, 25 |
| Conread position: | 5-219 |
| Cow position: | chr6:2111039-2111248 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-249 |
| Cow position: | chr6:1263517-1263283 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 164, 61 |
| Conread position: | 5-257 |
| Cow position: | chr6:43779053-43778818 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 164, 9 |
| Conread position: | 5-257 |
| Cow position: | chr6:55903450-55903201 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 85 |
| Conread position: | 5-267 |
| Cow position: | chr6:1274487-1274743 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 5-294 |
| Cow position: | chr6:21832300-21832585 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 5-299 |
| Cow position: | chr6:14263896-14264184 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 38 |
| Conread position: | 5-314 |
| Cow position: | chr6:16418321-16418627 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-314 |
| Cow position: | chr6:50120569-50120870 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 86 |
| Conread position: | 5-319 |
| Cow position: | chr6:182191-182490 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 29 |
| Conread position: | 5-319 |
| Cow position: | chr6:706359-706048 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:1537066-1536755 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:2186421-2186732 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:3272121-3272431 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:3886144-3886454 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:6182359-6182658 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 5-319 |
| Cow position: | chr6:14851388-14851696 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 48 |
| Conread position: | 5-319 |
| Cow position: | chr6:17049734-17049423 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:17121750-17121436 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 46 |
| Conread position: | 5-319 |
| Cow position: | chr6:17556312-17556622 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:18987491-18987193 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 84 |
| Conread position: | 5-319 |
| Cow position: | chr6:24242648-24242340 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:27526602-27526913 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:28481689-28481386 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr6:33466318-33466009 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 71 |
| Conread position: | 5-319 |
| Cow position: | chr6:34504160-34504471 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:34843352-34843663 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:36531635-36531323 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:40813722-40813415 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 5-319 |
| Cow position: | chr6:45736507-45736793 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-319 |
| Cow position: | chr6:46633479-46633169 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 71 |
| Conread position: | 5-319 |
| Cow position: | chr6:50485423-50485723 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:50571552-50571241 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:51717915-51717605 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:51733442-51733132 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:55538910-55539221 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:58031138-58030829 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr6:58605887-58605578 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 9 |
| Conread position: | 8-178 |
| Cow position: | chr6:65860732-65860568 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 8-315 |
| Cow position: | chr6:43797540-43797853 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 8-319 |
| Cow position: | chr6:478908-478600 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 8-319 |
| Cow position: | chr6:11168864-11168557 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 39 |
| Conread position: | 8-319 |
| Cow position: | chr6:15137815-15138123 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 8-319 |
| Cow position: | chr6:15275882-15276190 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 82 |
| Conread position: | 8-319 |
| Cow position: | chr6:40550342-40550650 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 9-152 |
| Cow position: | chr6:52696941-52696803 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 9-260 |
| Cow position: | chr6:21588341-21588093 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 82 |
| Conread position: | 9-319 |
| Cow position: | chr6:41231844-41231538 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 34 |
| Conread position: | 9-319 |
| Cow position: | chr6:43187466-43187155 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 82 |
| Conread position: | 9-319 |
| Cow position: | chr6:60876653-60876352 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 81 |
| Conread position: | 11-319 |
| Cow position: | chr6:60332699-60332393 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 18-288 |
| Cow position: | chr6:59596589-59596322 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 74 |
| Conread position: | 18-319 |
| Cow position: | chr6:40760389-40760080 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 18-321 |
| Cow position: | chr6:529545-529842 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 17 |
| Conread position: | 20-318 |
| Cow position: | chr6:12352187-12351883 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 20-319 |
| Cow position: | chr6:2618220-2618516 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 20-319 |
| Cow position: | chr6:12629242-12628952 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 46 |
| Conread position: | 21-319 |
| Cow position: | chr6:58016694-58016406 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 70 |
| Conread position: | 25-295 |
| Cow position: | chr6:53810928-53810666 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 25-319 |
| Cow position: | chr6:224164-224456 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 32-305 |
| Cow position: | chr6:35873395-35873665 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 38-167 |
| Cow position: | chr6:3445713-3445837 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 98, 52 |
| Conread position: | 38-319 |
| Cow position: | chr6:16593278-16593011 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 52 |
| Conread position: | 43-223 |
| Cow position: | chr6:1818440-1818616 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 61-319 |
| Cow position: | chr6:917348-917093 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 29 |
| Conread position: | 65-319 |
| Cow position: | chr6:4389042-4388790 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 85-319 |
| Cow position: | chr6:9733683-9733920 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 87-243 |
| Cow position: | chr6:62785055-62784896 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 96-319 |
| Cow position: | chr6:55041854-55042073 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 73 |
| Conread position: | 96-319 |
| Cow position: | chr6:57182089-57181870 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 73 |
Show alignments to all cow chromosomes.