Cow genome map

Conread name: unkn-54-2

Conread position: 1-319
Cow position: chr6:20451321-20451010 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 15

Conread position: 2-319
Cow position: chr6:50114038-50113734 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 3-319
Cow position: chr6:11638843-11639149 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 77

Conread position: 4-319
Cow position: chr6:5946413-5946725 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 86

Conread position: 5-192
Cow position: chr6:32664741-32664924 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 162, 86

Conread position: 5-202
Cow position: chr6:27887272-27887080 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 164, 25

Conread position: 5-219
Cow position: chr6:2111039-2111248 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 164, 85

Conread position: 5-249
Cow position: chr6:1263517-1263283 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 164, 61

Conread position: 5-257
Cow position: chr6:43779053-43778818 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 164, 9

Conread position: 5-257
Cow position: chr6:55903450-55903201 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 85

Conread position: 5-267
Cow position: chr6:1274487-1274743 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 33, 53

Conread position: 5-294
Cow position: chr6:21832300-21832585 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 83

Conread position: 5-299
Cow position: chr6:14263896-14264184 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 38

Conread position: 5-314
Cow position: chr6:16418321-16418627 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-314
Cow position: chr6:50120569-50120870 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 86

Conread position: 5-319
Cow position: chr6:182191-182490 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 29

Conread position: 5-319
Cow position: chr6:706359-706048 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:1537066-1536755 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:2186421-2186732 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:3272121-3272431 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:3886144-3886454 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:6182359-6182658 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 26

Conread position: 5-319
Cow position: chr6:14851388-14851696 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 48

Conread position: 5-319
Cow position: chr6:17049734-17049423 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:17121750-17121436 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 46

Conread position: 5-319
Cow position: chr6:17556312-17556622 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 85

Conread position: 5-319
Cow position: chr6:18987491-18987193 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 84

Conread position: 5-319
Cow position: chr6:24242648-24242340 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 85

Conread position: 5-319
Cow position: chr6:27526602-27526913 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:28481689-28481386 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chr6:33466318-33466009 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 71

Conread position: 5-319
Cow position: chr6:34504160-34504471 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:34843352-34843663 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:36531635-36531323 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:40813722-40813415 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 61

Conread position: 5-319
Cow position: chr6:45736507-45736793 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chr6:46633479-46633169 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 71

Conread position: 5-319
Cow position: chr6:50485423-50485723 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 85

Conread position: 5-319
Cow position: chr6:50571552-50571241 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:51717915-51717605 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:51733442-51733132 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 85

Conread position: 5-319
Cow position: chr6:55538910-55539221 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:58031138-58030829 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chr6:58605887-58605578 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 9

Conread position: 8-178
Cow position: chr6:65860732-65860568 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 8-315
Cow position: chr6:43797540-43797853 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 86

Conread position: 8-319
Cow position: chr6:478908-478600 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 82

Conread position: 8-319
Cow position: chr6:11168864-11168557 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 39

Conread position: 8-319
Cow position: chr6:15137815-15138123 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 82

Conread position: 8-319
Cow position: chr6:15275882-15276190 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 82

Conread position: 8-319
Cow position: chr6:40550342-40550650 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 82

Conread position: 9-152
Cow position: chr6:52696941-52696803 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 9-260
Cow position: chr6:21588341-21588093 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 82

Conread position: 9-319
Cow position: chr6:41231844-41231538 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 34

Conread position: 9-319
Cow position: chr6:43187466-43187155 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 82

Conread position: 9-319
Cow position: chr6:60876653-60876352 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 81

Conread position: 11-319
Cow position: chr6:60332699-60332393 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 80

Conread position: 18-288
Cow position: chr6:59596589-59596322 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 74

Conread position: 18-319
Cow position: chr6:40760389-40760080 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 35, 188

Conread position: 18-321
Cow position: chr6:529545-529842 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 17

Conread position: 20-318
Cow position: chr6:12352187-12351883 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 43

Conread position: 20-319
Cow position: chr6:2618220-2618516 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 71

Conread position: 20-319
Cow position: chr6:12629242-12628952 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 46

Conread position: 21-319
Cow position: chr6:58016694-58016406 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 70

Conread position: 25-295
Cow position: chr6:53810928-53810666 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 67

Conread position: 25-319
Cow position: chr6:224164-224456 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 49

Conread position: 32-305
Cow position: chr6:35873395-35873665 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 58

Conread position: 38-167
Cow position: chr6:3445713-3445837 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 98, 52

Conread position: 38-319
Cow position: chr6:16593278-16593011 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 52

Conread position: 43-223
Cow position: chr6:1818440-1818616 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 42

Conread position: 61-319
Cow position: chr6:917348-917093 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 29

Conread position: 65-319
Cow position: chr6:4389042-4388790 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 15

Conread position: 85-319
Cow position: chr6:9733683-9733920 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 80

Conread position: 87-243
Cow position: chr6:62785055-62784896 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 96-319
Cow position: chr6:55041854-55042073 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 73

Conread position: 96-319
Cow position: chr6:57182089-57181870 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 73

Show alignments to all cow chromosomes.