Cow genome map
| Conread name: | unkn-54-2 |
| Conread position: | 3-295 |
| Cow position: | chr9:5533647-5533909 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 166, 28 |
| Conread position: | 3-319 |
| Cow position: | chr9:10940006-10939703 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 79 |
| Conread position: | 4-318 |
| Cow position: | chr9:13493036-13492733 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 77 |
| Conread position: | 4-319 |
| Cow position: | chr9:27898319-27897985 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 10 |
| Conread position: | 4-319 |
| Cow position: | chr9:37158321-37158631 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 86 |
| Conread position: | 5-165 |
| Cow position: | chr9:6304726-6304570 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-172 |
| Cow position: | chr9:47882999-47883156 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 164, 61 |
| Conread position: | 5-192 |
| Cow position: | chr9:22755631-22755817 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 5-206 |
| Cow position: | chr9:40316424-40316229 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 164, 31 |
| Conread position: | 5-217 |
| Cow position: | chr9:44821174-44820968 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 164, 80 |
| Conread position: | 5-242 |
| Cow position: | chr9:43302311-43302544 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-268 |
| Cow position: | chr9:33057072-33056814 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 5-294 |
| Cow position: | chr9:54995920-54995644 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 46 |
| Conread position: | 5-302 |
| Cow position: | chr9:22803361-22803656 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 5-307 |
| Cow position: | chr9:3756549-3756840 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 77 |
| Conread position: | 5-307 |
| Cow position: | chr9:29193280-29193577 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 86 |
| Conread position: | 5-314 |
| Cow position: | chr9:44202790-44203096 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 84 |
| Conread position: | 5-315 |
| Cow position: | chr9:40143063-40143361 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 45 |
| Conread position: | 5-319 |
| Cow position: | chr9:2208384-2208689 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 37 |
| Conread position: | 5-319 |
| Cow position: | chr9:2495451-2495762 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 95 |
| Conread position: | 5-319 |
| Cow position: | chr9:2548405-2548716 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 5-319 |
| Cow position: | chr9:3806884-3806576 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 5-319 |
| Cow position: | chr9:7006031-7005720 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:13220827-13220522 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 5-319 |
| Cow position: | chr9:13472287-13472584 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 25 |
| Conread position: | 5-319 |
| Cow position: | chr9:16178874-16178566 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:17302690-17302994 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 31 |
| Conread position: | 5-319 |
| Cow position: | chr9:19156002-19156313 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:22319126-22319437 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 45 |
| Conread position: | 5-319 |
| Cow position: | chr9:24917998-24918309 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:28025110-28024798 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 5-319 |
| Cow position: | chr9:30401572-30401262 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 5-319 |
| Cow position: | chr9:32972656-32972346 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 46 |
| Conread position: | 5-319 |
| Cow position: | chr9:34059344-34059654 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:42570505-42570193 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:42868582-42868890 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 85 |
| Conread position: | 5-319 |
| Cow position: | chr9:52408034-52408346 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 160 |
| Conread position: | 5-319 |
| Cow position: | chr9:55031794-55031493 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 75 |
| Conread position: | 5-319 |
| Cow position: | chr9:59197140-59196836 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 58 |
| Conread position: | 8-319 |
| Cow position: | chr9:5007260-5006952 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 9-319 |
| Cow position: | chr9:5628105-5627798 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 81 |
| Conread position: | 16-319 |
| Cow position: | chr9:1519865-1519571 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 16-319 |
| Cow position: | chr9:26055308-26055025 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 18-314 |
| Cow position: | chr9:14003306-14003021 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 67 |
| Conread position: | 18-319 |
| Cow position: | chr9:18539934-18539642 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 72 |
| Conread position: | 20-280 |
| Cow position: | chr9:34917892-34917637 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 68 |
| Conread position: | 20-297 |
| Cow position: | chr9:49981776-49981504 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 20-319 |
| Cow position: | chr9:64049544-64049254 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 71 |
| Conread position: | 21-204 |
| Cow position: | chr9:15214810-15214626 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 32-314 |
| Cow position: | chr9:2527543-2527272 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 50-314 |
| Cow position: | chr9:2484378-2484633 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 53-247 |
| Cow position: | chr9:2618555-2618746 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 115-321 |
| Cow position: | chr9:43668011-43667807 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 111, 51 |
Show alignments to all cow chromosomes.