Cow genome map

Conread name: unkn-54-2

Conread position: 4-193
Cow position: chrX:28156731-28156554 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 86, 0

Conread position: 4-301
Cow position: chrX:12289920-12289641 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 222, 42

Conread position: 4-319
Cow position: chrX:1550164-1549852 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 86

Conread position: 4-319
Cow position: chrX:13406087-13406399 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 86

Conread position: 4-319
Cow position: chrX:24588537-24588847 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 26

Conread position: 4-319
Cow position: chrX:29916146-29916459 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 86

Conread position: 5-167
Cow position: chrX:35240070-35239913 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 5-185
Cow position: chrX:37134435-37134611 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 164, 85

Conread position: 5-202
Cow position: chrX:21254977-21254784 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 164, 85

Conread position: 5-224
Cow position: chrX:12178877-12178657 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 85

Conread position: 5-257
Cow position: chrX:32584733-32584981 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-277
Cow position: chrX:29892285-29892013 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 84

Conread position: 5-280
Cow position: chrX:35024258-35023996 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 44

Conread position: 5-294
Cow position: chrX:30060085-30059800 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-305
Cow position: chrX:5248585-5248292 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 83

Conread position: 5-306
Cow position: chrX:23022511-23022218 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 76

Conread position: 5-313
Cow position: chrX:27498027-27497724 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 86

Conread position: 5-315
Cow position: chrX:22493229-22492925 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 85

Conread position: 5-318
Cow position: chrX:5354105-5354412 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 52

Conread position: 5-319
Cow position: chrX:323112-322803 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:5365396-5365707 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 107

Conread position: 5-319
Cow position: chrX:5375079-5375389 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:6406552-6406243 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 87

Conread position: 5-319
Cow position: chrX:7551603-7551914 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:7572589-7572278 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 80

Conread position: 5-319
Cow position: chrX:16702869-16702558 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:16711154-16710843 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:18193888-18193577 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:18244183-18243880 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 79

Conread position: 5-319
Cow position: chrX:18950538-18950849 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:20953731-20953422 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chrX:21226675-21226369 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:21389776-21389465 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:22819276-22818962 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 87

Conread position: 5-319
Cow position: chrX:22870017-22869706 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 5-319
Cow position: chrX:23280222-23279914 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:23341793-23342104 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 85

Conread position: 5-319
Cow position: chrX:23572618-23572931 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 87

Conread position: 5-319
Cow position: chrX:27616010-27615700 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 86

Conread position: 5-319
Cow position: chrX:27977636-27977945 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 91

Conread position: 5-319
Cow position: chrX:28624563-28624867 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 52

Conread position: 5-319
Cow position: chrX:29099615-29099306 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-319
Cow position: chrX:34442244-34442541 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 79

Conread position: 5-319
Cow position: chrX:41156509-41156199 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 85

Conread position: 5-319
Cow position: chrX:41847332-41847642 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 102

Conread position: 5-321
Cow position: chrX:23221845-23222141 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 5-322
Cow position: chrX:23395805-23395491 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 5-322
Cow position: chrX:44193242-44193552 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 67

Conread position: 8-319
Cow position: chrX:9899148-9899449 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 41

Conread position: 8-319
Cow position: chrX:16782475-16782173 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 83

Conread position: 8-319
Cow position: chrX:21415062-21414754 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 81

Conread position: 8-319
Cow position: chrX:21592486-21592180 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 82

Conread position: 8-319
Cow position: chrX:23038790-23039096 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 57

Conread position: 8-319
Cow position: chrX:25451531-25451223 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 64

Conread position: 8-319
Cow position: chrX:26531168-26530860 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 82

Conread position: 9-196
Cow position: chrX:21063667-21063486 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 160, 81

Conread position: 9-245
Cow position: chrX:27095323-27095098 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 217, 82

Conread position: 9-257
Cow position: chrX:38150882-38150638 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 80

Conread position: 9-305
Cow position: chrX:12310195-12310484 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 82

Conread position: 9-319
Cow position: chrX:10866675-10866969 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 59

Conread position: 9-319
Cow position: chrX:30228919-30229225 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 81

Conread position: 11-307
Cow position: chrX:38228125-38228416 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 80

Conread position: 11-319
Cow position: chrX:28605903-28606202 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 157, 32

Conread position: 13-319
Cow position: chrX:15121971-15122273 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 77

Conread position: 17-322
Cow position: chrX:17663730-17664031 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 74

Conread position: 18-307
Cow position: chrX:30164053-30164337 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 73

Conread position: 18-319
Cow position: chrX:4905802-4906100 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 72

Conread position: 18-319
Cow position: chrX:25817642-25817930 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 62

Conread position: 19-307
Cow position: chrX:30136684-30136960 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 148, 32

Conread position: 21-272
Cow position: chrX:40560358-40560604 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 109, 69

Conread position: 21-319
Cow position: chrX:21662224-21661902 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 149, 70

Conread position: 22-209
Cow position: chrX:41879748-41879921 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 23-319
Cow position: chrX:32145075-32145369 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 25-319
Cow position: chrX:12996732-12997023 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 66

Conread position: 25-319
Cow position: chrX:29288176-29287885 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 66

Conread position: 32-306
Cow position: chrX:22579216-22579487 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 59

Conread position: 32-319
Cow position: chrX:9095814-9095530 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 58

Conread position: 35-319
Cow position: chrX:10438739-10439021 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 21

Conread position: 36-319
Cow position: chrX:9227735-9228015 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 55

Conread position: 37-211
Cow position: chrX:44053983-44053812 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 75, 54

Conread position: 42-307
Cow position: chrX:37815340-37815078 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 50

Conread position: 43-319
Cow position: chrX:16854205-16854478 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 47

Conread position: 55-223
Cow position: chrX:28765960-28766124 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 114, 36

Conread position: 62-319
Cow position: chrX:37488098-37487838 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 107-319
Cow position: chrX:32129878-32129664 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 62, 0

Show alignments to all cow chromosomes.