Cow genome map

Conread name: unkn-54-33

Conread position: 6-142
Cow position: chr11:38505536-38505399 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 7-266
Cow position: chr11:4027485-4027224 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 38

Conread position: 12-268
Cow position: chr11:45111699-45111956 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 9, 221

Conread position: 14-202
Cow position: chr11:11677429-11677622 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 113

Conread position: 14-234
Cow position: chr11:41170608-41170382 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-242
Cow position: chr11:19102401-19102176 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 7, 142

Conread position: 14-258
Cow position: chr11:31874691-31874442 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 71

Conread position: 14-258
Cow position: chr11:40775916-40775668 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 70

Conread position: 14-258
Cow position: chr11:43514551-43514302 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 113

Conread position: 14-260
Cow position: chr11:38835346-38835097 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 195

Conread position: 14-265
Cow position: chr11:62229275-62229522 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 141, 6

Conread position: 14-266
Cow position: chr11:23877388-23877646 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-266
Cow position: chr11:57627969-57627702 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 14-266
Cow position: chr11:58134472-58134730 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr11:10847527-10847789 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr11:11988192-11988451 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 205

Conread position: 14-269
Cow position: chr11:12358339-12358078 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr11:24393404-24393661 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 189

Conread position: 14-269
Cow position: chr11:29668531-29668270 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 71

Conread position: 14-269
Cow position: chr11:42432230-42432489 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 7, 27

Conread position: 14-269
Cow position: chr11:44157168-44156907 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 14-269
Cow position: chr11:71329673-71329931 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 195

Conread position: 14-269
Cow position: chr11:76374128-76373877 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 101

Conread position: 16-269
Cow position: chr11:84389715-84389970 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 136, 128

Conread position: 20-269
Cow position: chr11:52419483-52419735 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 135, 20

Conread position: 21-258
Cow position: chr11:10090769-10091010 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 81

Conread position: 22-145
Cow position: chr11:20510217-20510338 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 22-193
Cow position: chr11:47760603-47760427 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 130, 0

Conread position: 22-215
Cow position: chr11:4041002-4040808 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 105

Conread position: 22-232
Cow position: chr11:4270767-4270553 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-242
Cow position: chr11:9734576-9734349 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 22-257
Cow position: chr11:33194466-33194228 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 50

Conread position: 22-258
Cow position: chr11:3493098-3493325 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 0

Conread position: 22-258
Cow position: chr11:67450585-67450823 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 202

Conread position: 22-265
Cow position: chr11:67153736-67153981 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 130, 18

Conread position: 22-266
Cow position: chr11:85393717-85393469 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 31

Conread position: 22-269
Cow position: chr11:12093649-12093905 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 90, 34

Conread position: 22-269
Cow position: chr11:15983712-15983964 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:17107599-17107348 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 77

Conread position: 22-269
Cow position: chr11:19064162-19063911 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 22-269
Cow position: chr11:20734155-20733903 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:28108237-28108489 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:28229670-28229419 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:36744094-36743842 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:44251887-44252138 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 18

Conread position: 22-269
Cow position: chr11:53431972-53431720 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:61400964-61400721 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 151

Conread position: 22-269
Cow position: chr11:63655250-63654998 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:64046085-64046337 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:64081996-64081744 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr11:67846484-67846232 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 22-269
Cow position: chr11:73477395-73477647 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-272
Cow position: chr11:30206018-30206256 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 64, 73

Conread position: 22-275
Cow position: chr11:10217234-10216987 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 37, 32

Conread position: 22-278
Cow position: chr11:5343130-5342870 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 254

Conread position: 22-278
Cow position: chr11:53287078-53286818 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 254

Conread position: 23-269
Cow position: chr11:22934886-22935135 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 60

Conread position: 23-269
Cow position: chr11:26124833-26124588 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 103

Conread position: 24-239
Cow position: chr11:8245404-8245624 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 128, 0

Conread position: 24-257
Cow position: chr11:9157064-9156825 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 90, 94

Conread position: 24-258
Cow position: chr11:66727469-66727705 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 131, 93

Conread position: 24-269
Cow position: chr11:28054520-28054270 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 25-258
Cow position: chr11:9606486-9606249 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 30

Conread position: 25-269
Cow position: chr11:52885953-52885729 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 26-153
Cow position: chr11:33978111-33977984 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 26-265
Cow position: chr11:46246469-46246214 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 96, 0

Conread position: 28-265
Cow position: chr11:7116307-7116553 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 190

Conread position: 28-269
Cow position: chr11:31926267-31926511 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 10, 33

Conread position: 29-239
Cow position: chr11:10868590-10868794 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 79

Conread position: 31-266
Cow position: chr11:28049101-28048871 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 120, 14

Conread position: 32-266
Cow position: chr11:44492174-44491936 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 94

Conread position: 35-269
Cow position: chr11:16986223-16985986 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 25

Conread position: 38-262
Cow position: chr11:13066555-13066327 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 113, 219

Conread position: 39-212
Cow position: chr11:4057121-4057299 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 116, 0

Conread position: 42-263
Cow position: chr11:39802972-39803193 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 110, 52

Conread position: 42-269
Cow position: chr11:18072902-18072684 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 8, 18

Conread position: 49-257
Cow position: chr11:10051837-10052049 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 106, 126

Conread position: 62-269
Cow position: chr11:17546294-17546506 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 93, 0

Conread position: 71-269
Cow position: chr11:9216934-9216739 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 128

Conread position: 98-266
Cow position: chr11:30124311-30124142 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 22

Conread position: 151-269
Cow position: chr11:37476777-37476659 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.