Cow genome map
| Conread name: | unkn-54-33 |
| Conread position: | 10-265 |
| Cow position: | chr16:25892393-25892653 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 14, 177 |
| Conread position: | 11-266 |
| Cow position: | chr16:29046700-29046960 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 12-261 |
| Cow position: | chr16:23808100-23808354 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 14-207 |
| Cow position: | chr16:18498637-18498441 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 14-255 |
| Cow position: | chr16:25457784-25457537 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-258 |
| Cow position: | chr16:34530002-34530251 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 212 |
| Conread position: | 14-263 |
| Cow position: | chr16:2727607-2727352 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-263 |
| Cow position: | chr16:8816425-8816170 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-263 |
| Cow position: | chr16:12538245-12537990 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-263 |
| Cow position: | chr16:14666132-14665877 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-263 |
| Cow position: | chr16:25441305-25441561 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 210 |
| Conread position: | 14-263 |
| Cow position: | chr16:26663432-26663684 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 191 |
| Conread position: | 14-264 |
| Cow position: | chr16:23982991-23983245 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 14-266 |
| Cow position: | chr16:2411287-2411029 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-266 |
| Cow position: | chr16:9930615-9930872 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 14-266 |
| Cow position: | chr16:25171032-25171287 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 9, 188 |
| Conread position: | 14-266 |
| Cow position: | chr16:25257617-25257874 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 14-266 |
| Cow position: | chr16:43897590-43897334 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 14-268 |
| Cow position: | chr16:407351-407092 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 195 |
| Conread position: | 14-269 |
| Cow position: | chr16:836726-836983 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 186 |
| Conread position: | 14-269 |
| Cow position: | chr16:1567773-1567512 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr16:2239059-2238818 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 14-269 |
| Cow position: | chr16:2483460-2483199 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr16:4302657-4302399 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 82 |
| Conread position: | 14-269 |
| Cow position: | chr16:4479303-4479042 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr16:10437922-10438177 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 131 |
| Conread position: | 14-269 |
| Cow position: | chr16:15184484-15184732 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 14-269 |
| Cow position: | chr16:15566421-15566683 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr16:31592233-31591972 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr16:40296497-40296236 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-270 |
| Cow position: | chr16:15492909-15493172 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-278 |
| Cow position: | chr16:28437707-28437436 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 220 |
| Conread position: | 16-263 |
| Cow position: | chr16:49235144-49234896 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 139, 81 |
| Conread position: | 20-269 |
| Cow position: | chr16:42739419-42739168 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 22-120 |
| Cow position: | chr16:18687439-18687341 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-257 |
| Cow position: | chr16:29033731-29033983 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 22-258 |
| Cow position: | chr16:41163376-41163139 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 201 |
| Conread position: | 22-264 |
| Cow position: | chr16:26516727-26516480 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 22-265 |
| Cow position: | chr16:26650925-26651174 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 80, 107 |
| Conread position: | 22-266 |
| Cow position: | chr16:15476532-15476779 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 197 |
| Conread position: | 22-266 |
| Cow position: | chr16:16271907-16271673 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 22-266 |
| Cow position: | chr16:31832315-31832564 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 22-268 |
| Cow position: | chr16:5484009-5484260 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 22-268 |
| Cow position: | chr16:25341656-25341898 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 96 |
| Conread position: | 22-269 |
| Cow position: | chr16:32422-32673 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 201 |
| Conread position: | 22-269 |
| Cow position: | chr16:5661533-5661784 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 22-269 |
| Cow position: | chr16:10203749-10203498 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr16:10375895-10375658 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 22-269 |
| Cow position: | chr16:23252816-23252568 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 66 |
| Conread position: | 22-269 |
| Cow position: | chr16:28170683-28170431 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr16:28197990-28197737 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 22-269 |
| Cow position: | chr16:28471413-28471161 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 22-269 |
| Cow position: | chr16:53046037-53046289 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-275 |
| Cow position: | chr16:25188319-25188573 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 152 |
| Conread position: | 23-201 |
| Cow position: | chr16:25156187-25156004 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 23-269 |
| Cow position: | chr16:24105394-24105644 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 24-270 |
| Cow position: | chr16:25085333-25085560 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 32-269 |
| Cow position: | chr16:27734074-27733850 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 35-207 |
| Cow position: | chr16:15237447-15237621 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 54 |
| Conread position: | 36-265 |
| Cow position: | chr16:49256488-49256268 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 119, 10 |
| Conread position: | 42-265 |
| Cow position: | chr16:12670172-12669952 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 113 |
| Conread position: | 42-269 |
| Cow position: | chr16:6943312-6943544 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 47-269 |
| Cow position: | chr16:30049211-30049425 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 108, 22 |
| Conread position: | 53-269 |
| Cow position: | chr16:1431906-1432131 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 69-264 |
| Cow position: | chr16:37456289-37456090 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 70-269 |
| Cow position: | chr16:17057509-17057313 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 140 |
| Conread position: | 87-258 |
| Cow position: | chr16:43852364-43852189 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 151-269 |
| Cow position: | chr16:11283132-11283250 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-269 |
| Cow position: | chr16:28377040-28377158 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-269 |
| Cow position: | chr16:26374422-26374532 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.