Cow genome map
| Conread name: | unkn-54-33 |
| Conread position: | 6-269 |
| Cow position: | chr21:37046152-37046421 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 14-190 |
| Cow position: | chr21:9892479-9892655 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 14-225 |
| Cow position: | chr21:3779315-3779532 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-251 |
| Cow position: | chr21:4589446-4589207 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 114 |
| Conread position: | 14-252 |
| Cow position: | chr21:25975818-25976062 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 14-258 |
| Cow position: | chr21:18819623-18819368 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-260 |
| Cow position: | chr21:29624-29869 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 14-263 |
| Cow position: | chr21:33252053-33252301 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 14-263 |
| Cow position: | chr21:35144303-35144555 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 14-264 |
| Cow position: | chr21:23861866-23862121 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 14-266 |
| Cow position: | chr21:2711044-2711293 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 104 |
| Conread position: | 14-266 |
| Cow position: | chr21:13313312-13313566 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 7, 175 |
| Conread position: | 14-266 |
| Cow position: | chr21:27282933-27283190 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 172 |
| Conread position: | 14-269 |
| Cow position: | chr21:146469-146727 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 14-269 |
| Cow position: | chr21:1192298-1192559 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr21:2883201-2882939 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr21:4077377-4077635 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 14-269 |
| Cow position: | chr21:10567215-10567474 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 14-269 |
| Cow position: | chr21:10850623-10850879 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 183 |
| Conread position: | 14-269 |
| Cow position: | chr21:11453116-11452857 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 14-269 |
| Cow position: | chr21:23603091-23603339 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 14-269 |
| Cow position: | chr21:23812718-23812978 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 180 |
| Conread position: | 14-269 |
| Cow position: | chr21:31559113-31558857 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 188 |
| Conread position: | 14-269 |
| Cow position: | chr21:37371785-37372046 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 14-269 |
| Cow position: | chr21:47941399-47941657 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 14-271 |
| Cow position: | chr21:27565941-27566212 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 21-258 |
| Cow position: | chr21:21925766-21925526 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 22-135 |
| Cow position: | chr21:6340115-6340228 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-180 |
| Cow position: | chr21:26650590-26650748 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-242 |
| Cow position: | chr21:359917-360136 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 130, 81 |
| Conread position: | 22-258 |
| Cow position: | chr21:7266976-7266742 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 129, 176 |
| Conread position: | 22-258 |
| Cow position: | chr21:12055452-12055211 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-263 |
| Cow position: | chr21:2511444-2511690 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 22-264 |
| Cow position: | chr21:47949615-47949854 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 22-265 |
| Cow position: | chr21:2540532-2540294 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 130, 79 |
| Conread position: | 22-265 |
| Cow position: | chr21:21915242-21915486 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 22-265 |
| Cow position: | chr21:39087555-39087802 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 134, 103 |
| Conread position: | 22-265 |
| Cow position: | chr21:39425612-39425858 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 22-266 |
| Cow position: | chr21:4091197-4091446 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 22-266 |
| Cow position: | chr21:30599372-30599126 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 190 |
| Conread position: | 22-269 |
| Cow position: | chr21:1287669-1287419 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 22-269 |
| Cow position: | chr21:2475992-2475740 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr21:11406447-11406195 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr21:27070712-27070460 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr21:30562358-30562605 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-269 |
| Cow position: | chr21:40271125-40270873 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-278 |
| Cow position: | chr21:11506145-11506404 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 158 |
| Conread position: | 23-264 |
| Cow position: | chr21:467442-467673 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 25-241 |
| Cow position: | chr21:21518075-21518294 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 166 |
| Conread position: | 25-263 |
| Cow position: | chr21:48116659-48116899 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 130, 167 |
| Conread position: | 25-269 |
| Cow position: | chr21:2940059-2939811 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 25-269 |
| Cow position: | chr21:28735788-28736037 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 28-269 |
| Cow position: | chr21:6622145-6622391 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 33-266 |
| Cow position: | chr21:2416775-2417012 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 45-269 |
| Cow position: | chr21:26637625-26637397 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 59-269 |
| Cow position: | chr21:2502456-2502671 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 99-266 |
| Cow position: | chr21:18817934-18817764 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 120 |
| Conread position: | 133-269 |
| Cow position: | chr21:5840606-5840465 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 151-258 |
| Cow position: | chr21:27149595-27149702 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-269 |
| Cow position: | chr21:46916358-46916474 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.