Cow genome map
| Conread name: | unkn-54-33 |
| Conread position: | 6-249 |
| Cow position: | chr28:26489710-26489958 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 221 |
| Conread position: | 7-257 |
| Cow position: | chr28:22232995-22232738 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 11-266 |
| Cow position: | chr28:5113883-5113625 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 198 |
| Conread position: | 11-269 |
| Cow position: | chr28:34594393-34594657 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 14-179 |
| Cow position: | chr28:29820152-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-207 |
| Cow position: | chr28:8720880-8720681 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-207 |
| Cow position: | chr28:24668028-24668216 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 141, 6 |
| Conread position: | 14-230 |
| Cow position: | chr28:2084012-2084229 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 6 |
| Conread position: | 14-235 |
| Cow position: | chr28:33252730-33252950 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 14-256 |
| Cow position: | chr28:10581567-10581318 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-263 |
| Cow position: | chr28:5937894-5938152 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 14-263 |
| Cow position: | chr28:7002408-7002664 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 14-263 |
| Cow position: | chr28:12409810-12409558 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 14-263 |
| Cow position: | chr28:32791962-32791707 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 14-265 |
| Cow position: | chr28:2988823-2988568 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 6 |
| Conread position: | 14-266 |
| Cow position: | chr28:5566563-5566825 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-266 |
| Cow position: | chr28:5798163-5798415 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 14-266 |
| Cow position: | chr28:17388901-17389158 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 14-269 |
| Cow position: | chr28:782811-783070 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 14-269 |
| Cow position: | chr28:1505283-1505545 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr28:1814449-1814190 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 14-269 |
| Cow position: | chr28:3191828-3191577 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 6 |
| Conread position: | 14-269 |
| Cow position: | chr28:5751287-5751030 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 14-269 |
| Cow position: | chr28:7740897-7741145 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 165 |
| Conread position: | 14-269 |
| Cow position: | chr28:12150721-12150979 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 14-269 |
| Cow position: | chr28:13460387-13460646 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 113 |
| Conread position: | 14-269 |
| Cow position: | chr28:17666880-17666628 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 14-269 |
| Cow position: | chr28:26425833-26425572 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 15-257 |
| Cow position: | chr28:5765179-5765419 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 15-265 |
| Cow position: | chr28:7789534-7789277 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 6, 124 |
| Conread position: | 22-188 |
| Cow position: | chr28:485142-484971 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 22-202 |
| Cow position: | chr28:3020323-3020142 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 130, 67 |
| Conread position: | 22-258 |
| Cow position: | chr28:1386977-1386735 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 22-258 |
| Cow position: | chr28:14750966-14751207 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-266 |
| Cow position: | chr28:6779916-6779668 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 22-268 |
| Cow position: | chr28:22260724-22260477 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 178 |
| Conread position: | 22-269 |
| Cow position: | chr28:1167455-1167203 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr28:1953550-1953804 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 22-269 |
| Cow position: | chr28:6538841-6538589 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 22-269 |
| Cow position: | chr28:7822678-7822930 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr28:18520019-18519771 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 53 |
| Conread position: | 22-270 |
| Cow position: | chr28:10071709-10071951 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 130, 173 |
| Conread position: | 23-269 |
| Cow position: | chr28:2724501-2724250 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 23-269 |
| Cow position: | chr28:10497587-10497347 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 25-142 |
| Cow position: | chr28:24588515-24588632 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-153 |
| Cow position: | chr28:7880952-7881080 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-153 |
| Cow position: | chr28:7881968-7881841 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 25-269 |
| Cow position: | chr28:24589277-24589526 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 28-266 |
| Cow position: | chr28:5813442-5813685 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 30-269 |
| Cow position: | chr28:8379268-8379511 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 40-270 |
| Cow position: | chr28:14195245-14195014 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 9 |
| Conread position: | 43-278 |
| Cow position: | chr28:18100776-18100533 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 179 |
| Conread position: | 59-269 |
| Cow position: | chr28:21359939-21360154 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 88-269 |
| Cow position: | chr28:14704897-14704714 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 107-269 |
| Cow position: | chr28:18147240-18147078 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.