Cow genome map
| Conread name: | unkn-54-33 |
| Conread position: | 6-265 |
| Cow position: | chr5:10843233-10842969 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 221 |
| Conread position: | 7-269 |
| Cow position: | chr5:57482352-57482083 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 11-269 |
| Cow position: | chr5:31101429-31101169 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 14-152 |
| Cow position: | chr5:6155020-6154881 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-153 |
| Cow position: | chr5:49119079-49118941 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 113 |
| Conread position: | 14-221 |
| Cow position: | chr5:3503904-3503691 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 14-251 |
| Cow position: | chr5:26084379-26084138 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 138, 6 |
| Conread position: | 14-258 |
| Cow position: | chr5:3964646-3964894 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 6 |
| Conread position: | 14-261 |
| Cow position: | chr5:3786126-3786370 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 7, 190 |
| Conread position: | 14-266 |
| Cow position: | chr5:415521-415264 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 14-266 |
| Cow position: | chr5:4069415-4069673 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-266 |
| Cow position: | chr5:7274024-7274284 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-266 |
| Cow position: | chr5:10919020-10919278 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-266 |
| Cow position: | chr5:48808534-48808285 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 139 |
| Conread position: | 14-266 |
| Cow position: | chr5:64781817-64781559 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-268 |
| Cow position: | chr5:46660239-46660488 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 138, 6 |
| Conread position: | 14-269 |
| Cow position: | chr5:2914649-2914906 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 14-269 |
| Cow position: | chr5:4385443-4385699 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 85 |
| Conread position: | 14-269 |
| Cow position: | chr5:12643525-12643264 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr5:14658448-14658192 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 14-269 |
| Cow position: | chr5:24098868-24099128 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 99 |
| Conread position: | 14-269 |
| Cow position: | chr5:37732547-37732807 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 14-269 |
| Cow position: | chr5:41555413-41555160 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 14-269 |
| Cow position: | chr5:46738378-46738118 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-269 |
| Cow position: | chr5:54792439-54792181 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 191 |
| Conread position: | 14-269 |
| Cow position: | chr5:73489360-73489102 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 14-278 |
| Cow position: | chr5:55628187-55628455 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 15-260 |
| Cow position: | chr5:51770745-51770498 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 8, 151 |
| Conread position: | 21-269 |
| Cow position: | chr5:30579534-30579783 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 134, 109 |
| Conread position: | 22-142 |
| Cow position: | chr5:24577117-24577237 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-153 |
| Cow position: | chr5:59144574-59144706 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 22-153 |
| Cow position: | chr5:59482457-59482589 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 22-193 |
| Cow position: | chr5:26079017-26078847 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 22-244 |
| Cow position: | chr5:54932015-54931789 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 72 |
| Conread position: | 22-265 |
| Cow position: | chr5:2531463-2531706 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 192 |
| Conread position: | 22-265 |
| Cow position: | chr5:32154691-32154450 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 132, 37 |
| Conread position: | 22-265 |
| Cow position: | chr5:46664206-46664446 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 22-269 |
| Cow position: | chr5:4018995-4018744 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 22-269 |
| Cow position: | chr5:4089274-4089526 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 22-269 |
| Cow position: | chr5:6588817-6588564 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 66 |
| Conread position: | 22-269 |
| Cow position: | chr5:14380346-14380597 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 233 |
| Conread position: | 22-269 |
| Cow position: | chr5:18122266-18122021 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 104 |
| Conread position: | 22-269 |
| Cow position: | chr5:18663995-18664247 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 22-269 |
| Cow position: | chr5:18666197-18666449 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 22-269 |
| Cow position: | chr5:23960112-23959860 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr5:27909069-27908817 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr5:35300302-35300554 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr5:44459686-44459938 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 22-269 |
| Cow position: | chr5:46644886-46645133 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 130, 202 |
| Conread position: | 22-269 |
| Cow position: | chr5:46776282-46776534 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 22-269 |
| Cow position: | chr5:48468076-48467825 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 174 |
| Conread position: | 22-269 |
| Cow position: | chr5:59060821-59061069 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 202 |
| Conread position: | 22-277 |
| Cow position: | chr5:31706777-31707034 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 127, 204 |
| Conread position: | 22-278 |
| Cow position: | chr5:34696811-34697067 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 90 |
| Conread position: | 23-258 |
| Cow position: | chr5:10776060-10775820 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 23-269 |
| Cow position: | chr5:241406-241657 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 24-269 |
| Cow position: | chr5:10483053-10483303 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 25-251 |
| Cow position: | chr5:53625678-53625453 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 31 |
| Conread position: | 25-266 |
| Cow position: | chr5:41528547-41528306 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 130, 176 |
| Conread position: | 26-275 |
| Cow position: | chr5:27002241-27002492 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 129, 67 |
| Conread position: | 29-258 |
| Cow position: | chr5:18115638-18115406 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 102, 43 |
| Conread position: | 31-269 |
| Cow position: | chr5:58196245-58196481 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 33-266 |
| Cow position: | chr5:24588979-24589217 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 38-261 |
| Cow position: | chr5:29761779-29761998 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 40-258 |
| Cow position: | chr5:32772714-32772937 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 81, 76 |
| Conread position: | 40-266 |
| Cow position: | chr5:28023735-28023971 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 40-269 |
| Cow position: | chr5:14785139-14784906 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 46-268 |
| Cow position: | chr5:23228923-23229145 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 53-266 |
| Cow position: | chr5:28011889-28012108 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 53-266 |
| Cow position: | chr5:45700554-45700767 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 100, 148 |
| Conread position: | 58-224 |
| Cow position: | chr5:49591852-49591674 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 58-269 |
| Cow position: | chr5:47830828-47830616 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 69-269 |
| Cow position: | chr5:46807562-46807767 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 71-216 |
| Cow position: | chr5:32946410-32946560 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 73-269 |
| Cow position: | chr5:41961465-41961268 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 127 |
| Conread position: | 90-269 |
| Cow position: | chr5:4757893-4757708 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-263 |
| Cow position: | chr5:26343276-26343452 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 94-266 |
| Cow position: | chr5:1341756-1341579 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 99-269 |
| Cow position: | chr5:45181864-45181689 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 108-269 |
| Cow position: | chr5:24999574-24999411 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 151-269 |
| Cow position: | chr5:11625029-11624912 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 151-269 |
| Cow position: | chr5:38073369-38073487 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-269 |
| Cow position: | chr5:42505341-42505459 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-269 |
| Cow position: | chr5:44784576-44784458 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 155-269 |
| Cow position: | chr5:6154839-6154725 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.