Cow genome map

Conread name: unkn-54-33

Conread position: 4-269
Cow position: chr6:38900841-38900571 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 8, 130

Conread position: 6-269
Cow position: chr6:26670539-26670271 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 172

Conread position: 7-183
Cow position: chr6:65881241-65881423 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 7-269
Cow position: chr6:43793381-43793112 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 16, 75

Conread position: 11-227
Cow position: chr6:47042859-47042637 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 11-266
Cow position: chr6:40867222-40866966 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 191

Conread position: 14-202
Cow position: chr6:8021268-8021449 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 7, 80

Conread position: 14-221
Cow position: chr6:8202079-8202292 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 0

Conread position: 14-232
Cow position: chr6:55543983-55543759 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 0

Conread position: 14-234
Cow position: chr6:25794111-25794335 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 9, 45

Conread position: 14-250
Cow position: chr6:39050882-39050647 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 138, 9

Conread position: 14-255
Cow position: chr6:51086282-51086528 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 109

Conread position: 14-261
Cow position: chr6:14852241-14851988 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-263
Cow position: chr6:8760962-8760708 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 95

Conread position: 14-263
Cow position: chr6:17046396-17046651 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-263
Cow position: chr6:30274836-30274586 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 181

Conread position: 14-263
Cow position: chr6:58027095-58027345 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 14-265
Cow position: chr6:10643889-10644132 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 7, 189

Conread position: 14-266
Cow position: chr6:24239397-24239651 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 125

Conread position: 14-266
Cow position: chr6:34892663-34892406 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 209

Conread position: 14-266
Cow position: chr6:39437889-39438140 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 161

Conread position: 14-266
Cow position: chr6:40813329-40813072 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 33

Conread position: 14-268
Cow position: chr6:15280213-15279958 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 45

Conread position: 14-269
Cow position: chr6:3277609-3277359 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 132, 39

Conread position: 14-269
Cow position: chr6:5949438-5949177 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr6:6566949-6567191 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 7, 66

Conread position: 14-269
Cow position: chr6:15140841-15140585 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 45

Conread position: 14-269
Cow position: chr6:28105512-28105256 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 32

Conread position: 14-269
Cow position: chr6:29311834-29312095 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr6:35876373-35876116 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 191

Conread position: 14-269
Cow position: chr6:36526391-36526649 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 220

Conread position: 14-269
Cow position: chr6:52693366-52693625 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 117

Conread position: 14-270
Cow position: chr6:7178938-7178671 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 7, 154

Conread position: 21-258
Cow position: chr6:1099832-1099592 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 80

Conread position: 21-263
Cow position: chr6:28275331-28275574 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 153

Conread position: 22-229
Cow position: chr6:2887532-2887744 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 129, 0

Conread position: 22-232
Cow position: chr6:25214606-25214821 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 130, 190

Conread position: 22-251
Cow position: chr6:65928315-65928550 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-257
Cow position: chr6:66232163-66232402 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 133, 79

Conread position: 22-258
Cow position: chr6:27169926-27170166 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 105

Conread position: 22-258
Cow position: chr6:38233185-38233422 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 134, 41

Conread position: 22-263
Cow position: chr6:20560761-20560515 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-265
Cow position: chr6:13847370-13847619 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 177

Conread position: 22-265
Cow position: chr6:58600832-58601074 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 126, 81

Conread position: 22-266
Cow position: chr6:30479455-30479699 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 130, 178

Conread position: 22-269
Cow position: chr6:331121-330869 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:1411598-1411346 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:1822282-1822030 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:3889133-3888885 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 165

Conread position: 22-269
Cow position: chr6:7141118-7140865 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 22-269
Cow position: chr6:10499379-10499127 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:12665968-12665722 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 23

Conread position: 22-269
Cow position: chr6:13104403-13104654 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 36

Conread position: 22-269
Cow position: chr6:13944252-13944504 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:16052224-16052477 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 22-269
Cow position: chr6:24323036-24322784 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:27470949-27471199 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 9, 187

Conread position: 22-269
Cow position: chr6:28063681-28063932 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 134, 0

Conread position: 22-269
Cow position: chr6:39908872-39909124 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:40252006-40252258 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 22-269
Cow position: chr6:40275433-40275685 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 65

Conread position: 22-269
Cow position: chr6:43618060-43618312 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 22-269
Cow position: chr6:44150211-44149959 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr6:59918724-59918474 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 58

Conread position: 22-269
Cow position: chr6:64715581-64715828 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 131, 182

Conread position: 22-269
Cow position: chr6:69221865-69221613 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-270
Cow position: chr6:65841937-65842183 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 130, 104

Conread position: 22-278
Cow position: chr6:2375046-2375306 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 254

Conread position: 22-278
Cow position: chr6:44032137-44032397 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 254

Conread position: 23-258
Cow position: chr6:13317156-13316915 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 45, 0

Conread position: 23-263
Cow position: chr6:11724758-11724516 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 8

Conread position: 24-255
Cow position: chr6:27529654-27529418 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 24-269
Cow position: chr6:68027137-68027387 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 25-258
Cow position: chr6:40315738-40315974 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 130, 21

Conread position: 25-269
Cow position: chr6:15477257-15477504 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 108

Conread position: 26-268
Cow position: chr6:21973006-21973254 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 129, 0

Conread position: 27-258
Cow position: chr6:44550738-44550509 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 120

Conread position: 29-258
Cow position: chr6:11274561-11274338 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 123, 17

Conread position: 29-269
Cow position: chr6:185431-185186 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 54

Conread position: 31-261
Cow position: chr6:10500654-10500888 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 118, 0

Conread position: 31-269
Cow position: chr6:3488063-3487825 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 27

Conread position: 31-269
Cow position: chr6:17597936-17597694 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 173

Conread position: 37-269
Cow position: chr6:186109-185872 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 40-258
Cow position: chr6:65821756-65821536 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 115, 14

Conread position: 45-268
Cow position: chr6:51714074-51714298 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 88, 11

Conread position: 53-220
Cow position: chr6:26044926-26045098 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 102, 149

Conread position: 60-250
Cow position: chr6:6475483-6475295 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 34

Conread position: 69-269
Cow position: chr6:914028-914232 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 83, 123

Conread position: 69-269
Cow position: chr6:40973675-40973875 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 86, 132

Conread position: 71-269
Cow position: chr6:40326286-40326086 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 84, 12

Conread position: 93-266
Cow position: chr6:32330105-32329928 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 33

Conread position: 93-269
Cow position: chr6:702328-702510 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 62, 0

Conread position: 93-269
Cow position: chr6:28133354-28133537 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 59, 136

Conread position: 128-269
Cow position: chr6:43999518-43999658 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 150-269
Cow position: chr6:3048788-3048669 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 151-266
Cow position: chr6:40554100-40553985 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 151-269
Cow position: chr6:28491086-28490968 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 151-269
Cow position: chr6:28703840-28703722 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.