Cow genome map

Conread name: unkn-54-33

Conread position: 6-266
Cow position: chr9:36724759-36725025 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 111

Conread position: 10-270
Cow position: chr9:53702459-53702200 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 85

Conread position: 11-265
Cow position: chr9:13476618-13476358 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 11-269
Cow position: chr9:222264-222002 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 11

Conread position: 11-269
Cow position: chr9:47002458-47002722 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 11-269
Cow position: chr9:60277754-60277489 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-275
Cow position: chr9:42556192-42556463 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 187

Conread position: 14-182
Cow position: chr9:25023032-25022858 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 7, 0

Conread position: 14-212
Cow position: chr9:6050777-6050575 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 7, 45

Conread position: 14-225
Cow position: chr9:7003054-7003271 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-225
Cow position: chr9:7061823-7061606 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 7, 0

Conread position: 14-229
Cow position: chr9:2186237-2186449 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 138, 44

Conread position: 14-241
Cow position: chr9:44795543-44795769 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 179

Conread position: 14-257
Cow position: chr9:2171329-2171578 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 7, 57

Conread position: 14-257
Cow position: chr9:44818450-44818692 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 9

Conread position: 14-258
Cow position: chr9:3005979-3005729 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 14-263
Cow position: chr9:3543110-3543365 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-266
Cow position: chr9:4532763-4533020 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 223

Conread position: 14-266
Cow position: chr9:10322071-10322328 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 209

Conread position: 14-266
Cow position: chr9:34722181-34722428 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 108, 6

Conread position: 14-266
Cow position: chr9:47545009-47545262 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 11

Conread position: 14-268
Cow position: chr9:59454995-59454738 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr9:3803609-3803869 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 188

Conread position: 14-269
Cow position: chr9:6830238-6829977 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 6

Conread position: 14-269
Cow position: chr9:9013370-9013628 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 14-269
Cow position: chr9:16176039-16176298 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 92

Conread position: 14-269
Cow position: chr9:18509531-18509272 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 161

Conread position: 14-269
Cow position: chr9:22653838-22654099 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr9:27034951-27035209 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr9:28022069-28022331 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 14-269
Cow position: chr9:29628478-29628220 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 56

Conread position: 14-269
Cow position: chr9:30672638-30672893 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 88

Conread position: 14-269
Cow position: chr9:31807836-31808097 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr9:37162541-37162287 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 6

Conread position: 14-269
Cow position: chr9:37970939-37970669 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr9:42309953-42310214 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 14-269
Cow position: chr9:51181918-51181658 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 62

Conread position: 14-278
Cow position: chr9:29027932-29027667 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 18-269
Cow position: chr9:5514696-5514949 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 98, 27

Conread position: 20-257
Cow position: chr9:14762171-14761934 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 132, 29

Conread position: 20-269
Cow position: chr9:59173873-59173619 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 20

Conread position: 22-114
Cow position: chr9:163229-163137 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 22-142
Cow position: chr9:25484145-25484265 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 94

Conread position: 22-142
Cow position: chr9:60651438-60651318 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 22-153
Cow position: chr9:16268646-16268777 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 22-174
Cow position: chr9:25754949-25754793 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 67

Conread position: 22-216
Cow position: chr9:49177553-49177354 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 130, 0

Conread position: 22-258
Cow position: chr9:20308867-20308634 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 130, 23

Conread position: 22-258
Cow position: chr9:30826955-30827195 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 61

Conread position: 22-258
Cow position: chr9:45873621-45873861 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 7

Conread position: 22-266
Cow position: chr9:130914-130664 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 22-266
Cow position: chr9:64018187-64017938 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr9:1251720-1251471 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 94

Conread position: 22-269
Cow position: chr9:3566561-3566309 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr9:17064113-17063861 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 22-269
Cow position: chr9:25035571-25035319 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr9:27934362-27934614 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr9:28440083-28440334 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 98

Conread position: 22-269
Cow position: chr9:28678247-28678499 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr9:31064707-31064959 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 22-269
Cow position: chr9:42569181-42569429 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 185

Conread position: 22-269
Cow position: chr9:50790988-50791238 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 174

Conread position: 22-269
Cow position: chr9:51210956-51211208 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 22-269
Cow position: chr9:59426049-59426296 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 134, 80

Conread position: 22-270
Cow position: chr9:29328930-29329187 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 17, 241

Conread position: 24-250
Cow position: chr9:1075921-1075690 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 63

Conread position: 24-269
Cow position: chr9:780528-780278 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 25-258
Cow position: chr9:1636230-1636466 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 128, 92

Conread position: 25-269
Cow position: chr9:1980268-1980517 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 100

Conread position: 25-269
Cow position: chr9:59536379-59536623 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 130, 19

Conread position: 27-269
Cow position: chr9:2053047-2053282 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 127, 160

Conread position: 27-269
Cow position: chr9:4282057-4282303 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 113, 80

Conread position: 27-275
Cow position: chr9:59511669-59511923 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 124, 19

Conread position: 31-269
Cow position: chr9:32969234-32969477 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 35-258
Cow position: chr9:25187391-25187621 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 40-269
Cow position: chr9:59482506-59482274 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 115, 72

Conread position: 42-242
Cow position: chr9:5004279-5004482 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 110, 166

Conread position: 42-265
Cow position: chr9:37095823-37096044 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 11

Conread position: 42-269
Cow position: chr9:6249594-6249826 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 42-269
Cow position: chr9:30487868-30488100 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 47-269
Cow position: chr9:64119525-64119744 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 108, 73

Conread position: 58-269
Cow position: chr9:3998322-3998538 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 97, 0

Conread position: 60-269
Cow position: chr9:4943500-4943286 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 92, 0

Conread position: 69-266
Cow position: chr9:9705873-9706073 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 37

Conread position: 132-269
Cow position: chr9:40223673-40223815 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 157-263
Cow position: chr9:10936993-10937099 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 169-269
Cow position: chr9:25022742-25022643 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 5, 0

Show alignments to all cow chromosomes.