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Cow genome map

           
Conread name:
           
unkn-AR078G03iTHYEG03S
        

               
Conread position:
               
1-127
               

               
Cow position:
               
chr29:45588708-45588590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr29:13458823-13458980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr29:686427-686262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr29:4065852-4066031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr29:18072694-18072880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr29:45650578-45650397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr29:8125830-8125591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
175, 90
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr29:37292542-37292786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr29:11696299-11696537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
196, 20
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr29:10659583-10659338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 94
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr29:26734798-26735043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
195, 74
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr29:35636189-35636453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr29:35738505-35738254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
186, 90
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr29:44901937-44901684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
195, 30
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr29:20178359-20178113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr29:32767756-32767510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr29:13553897-13554165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
196, 80
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr29:6925784-6926039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr29:12005000-12004731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr29:21000406-21000668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
247, 41
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr29:9686236-9685959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
194, 63
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr29:5919560-5919290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr29:3704439-3704151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
196, 82
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr29:24119972-24119689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 88
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr29:18212218-18211943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
196, 71
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr29:24103784-24103479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr29:2071804-2071507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
195, 70
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr29:36183040-36183345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 47
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr29:9139173-9139488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 84
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr29:28883845-28884151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
304, 70
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr29:40166007-40166314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr29:477867-478190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 93
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr29:23984198-23983858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
197, 93
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr29:9638547-9638221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr29:28868397-28868742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 90
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr29:11787557-11787904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:6217782-6217434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:26615960-26615605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
196, 80
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr29:6014868-6015238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr29:37961213-37960864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr29:4194356-4194016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
196, 48
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr29:7666266-7665903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
196, 71
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr29:31926525-31926186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 39
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr29:25333689-25333346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
197, 61
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr29:37599440-37599105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
186, 66
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr29:20903523-20903174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 90
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr29:15940873-15940518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr29:6286393-6286039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 75
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr29:6293703-6293359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
196, 54
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr29:32963319-32963659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr29:39567452-39567802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr29:32290367-32290735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 69
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr29:34773963-34773608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
305, 52
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr29:11704887-11705242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 76
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr29:13372428-13372794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 80
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr29:2263261-2262863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 240
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr29:17409094-17409468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr29:6844865-6844498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 71
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr29:25088518-25088876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 68
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr29:16309515-16309881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr29:7966011-7966390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 37
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr29:29302889-29302505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
209, 27
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr29:2188572-2188189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
304, 68
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr29:13639602-13639198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr29:38581733-38582136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 19
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr29:19389251-19389653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
305, 41
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr29:12784190-12783771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 74
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr29:20933470-20933902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 90
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr29:26130548-26130962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 106
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr29:39111543-39111137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
192, 48
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr29:24952450-24952876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 20
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr29:7956219-7955796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 70
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr29:12679919-12680350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 93
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr29:17222173-17222611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr29:34745890-34745466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 69
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr29:9709463-9709891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 56
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr29:19949074-19949503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr29:20626341-20626768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
305, 65
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr29:22162486-22162066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr29:35406029-35405592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
196, 67
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:5062896-5063342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:11915581-11916020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:24292641-24293069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 41
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:31786443-31786873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:31928744-31929185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:44378654-44378208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr29:1307099-1306663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr29:26778649-26779076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr29:29056949-29057379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr29:34360029-34359624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 40
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr29:40583562-40583985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 74
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr29:699850-699427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
197, 24
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr29:17109736-17110154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 75
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr29:27009183-27009627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 75
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr29:28775690-28775264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 74
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr29:22068983-22068538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr29:28195752-28195329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 99
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr29:23697743-23698173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 75
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr29:32799938-32799499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 63
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr29:36530628-36531070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:1933792-1933364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 75
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:4120610-4121061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 68
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:16609503-16609956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 35
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:23874224-23874668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:24624012-24624448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:25474672-25475137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:29589152-29588719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:35459006-35458563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 62
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr29:41530614-41531057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:3502321-3502769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 129
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:4625228-4624791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 53
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:15944334-15944768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
305, 83
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:20674041-20673601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:28197243-28196813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
197, 91
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:29769581-29769145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 58
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:35434635-35435065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 90
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr29:36586343-36586776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 90
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr29:3237594-3237138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
10, 94
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr29:4520100-4520539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr29:3584360-3583905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr29:21933348-21932910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 83
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr29:27858556-27859000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
188, 62
               

               
Conread position:
               
1-464
               

               
Cow position:
               
chr29:4492272-4491839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr29:19756213-19756650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
276, 90
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr29:26017746-26017276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr29:22720893-22721021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr29:26519695-26519517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
183, 54
               

               
Conread position:
               
2-232
               

               
Cow position:
               
chr29:21236882-21237097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
196, 57
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr29:5977355-5977125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 40
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr29:28689376-28689609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
194, 91
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr29:18748821-18748582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr29:42886146-42886415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
137, 70
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr29:2522344-2522590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
194, 46
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr29:29558675-29558402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
2-301
               

               
Cow position:
               
chr29:19792514-19792224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr29:14615492-14615200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
235, 12
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chr29:26984993-26985311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr29:2984650-2984989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 74
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr29:9911943-9912288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
195, 62
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr29:19338745-19339123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 89
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chr29:2744506-2744064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 74
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chr29:22613198-22613624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
191, 6
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr29:2644542-2644115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
195, 51
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr29:16195618-16196061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 69
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr29:35291865-35292292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr29:23844597-23845047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 89
               

               
Conread position:
               
2-461
               

               
Cow position:
               
chr29:34744851-34744419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 71
               

               
Conread position:
               
2-472
               

               
Cow position:
               
chr29:19762038-19762488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
196, 92
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr29:6813208-6813362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr29:35281267-35281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
194, 69
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr29:16756821-16757070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr29:24345697-24345432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr29:3502824-3503078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
195, 66
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr29:94782-94534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
193, 73
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr29:17338-17038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
209, 52
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr29:16359380-16359705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
156, 55
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr29:13615876-13615540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
3-370
               

               
Cow position:
               
chr29:40852699-40853050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr29:45005852-45005480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
204, 54
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr29:87253-86839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 11
               

               
Conread position:
               
3-417
               

               
Cow position:
               
chr29:21443577-21443169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 66
               

               
Conread position:
               
3-432
               

               
Cow position:
               
chr29:19254056-19253647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 73
               

               
Conread position:
               
3-450
               

               
Cow position:
               
chr29:18878734-18878282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
3-455
               

               
Cow position:
               
chr29:40117335-40117768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 88
               

               
Conread position:
               
3-458
               

               
Cow position:
               
chr29:40891935-40891500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 88
               

               
Conread position:
               
4-387
               

               
Cow position:
               
chr29:29512370-29512002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
188, 48
               

               
Conread position:
               
4-426
               

               
Cow position:
               
chr29:8669123-8669531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
4-455
               

               
Cow position:
               
chr29:26259245-26259682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
194, 27
               

               
Conread position:
               
6-277
               

               
Cow position:
               
chr29:39642946-39643204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
189, 64
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr29:868542-868863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 85
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr29:4480406-4480042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
192, 85
               

               
Conread position:
               
6-454
               

               
Cow position:
               
chr29:25267887-25268341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
6-456
               

               
Cow position:
               
chr29:22175460-22175896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 66
               

               
Conread position:
               
7-448
               

               
Cow position:
               
chr29:40096726-40097179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
8-453
               

               
Cow position:
               
chr29:38580749-38581195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 12
               

               
Conread position:
               
10-350
               

               
Cow position:
               
chr29:19821070-19821385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
187, 54
               

               
Conread position:
               
10-451
               

               
Cow position:
               
chr29:14501364-14501796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 81
               

               
Conread position:
               
10-458
               

               
Cow position:
               
chr29:19428437-19428858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
185, 56
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr29:1395380-1395638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
11-455
               

               
Cow position:
               
chr29:3711161-3711581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 78
               

               
Conread position:
               
14-263
               

               
Cow position:
               
chr29:5677562-5677803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
14-274
               

               
Cow position:
               
chr29:2532839-2533084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
182, 79
               

               
Conread position:
               
14-449
               

               
Cow position:
               
chr29:1325215-1325645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 68
               

               
Conread position:
               
15-363
               

               
Cow position:
               
chr29:22936058-22936386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
182, 61
               

               
Conread position:
               
16-401
               

               
Cow position:
               
chr29:28166438-28166073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 56
               

               
Conread position:
               
19-448
               

               
Cow position:
               
chr29:31489102-31489522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 49
               

               
Conread position:
               
19-454
               

               
Cow position:
               
chr29:16657468-16657895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 30
               

               
Conread position:
               
20-356
               

               
Cow position:
               
chr29:28446476-28446148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
168, 74
               

               
Conread position:
               
20-361
               

               
Cow position:
               
chr29:463870-463539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
178, 59
               

               
Conread position:
               
20-416
               

               
Cow position:
               
chr29:5109427-5109016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
178, 71
               

               
Conread position:
               
20-457
               

               
Cow position:
               
chr29:35677761-35677334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 56
               

               
Conread position:
               
21-290
               

               
Cow position:
               
chr29:14484761-14484496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
177, 58
               

               
Conread position:
               
21-454
               

               
Cow position:
               
chr29:42364232-42363812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
23-370
               

               
Cow position:
               
chr29:26654254-26653923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
159, 68
               

               
Conread position:
               
25-456
               

               
Cow position:
               
chr29:6337451-6337856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 51
               

               
Conread position:
               
28-412
               

               
Cow position:
               
chr29:27618669-27619043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
178, 56
               

               
Conread position:
               
28-442
               

               
Cow position:
               
chr29:30440717-30441131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 40
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr29:41364902-41365197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 43
               

               
Conread position:
               
29-453
               

               
Cow position:
               
chr29:22778389-22777978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 62
               

               
Conread position:
               
30-449
               

               
Cow position:
               
chr29:26275407-26275800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
276, 61
               

               
Conread position:
               
30-457
               

               
Cow position:
               
chr29:26269862-26270275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
168, 8
               

               
Conread position:
               
31-481
               

               
Cow position:
               
chr29:22690014-22690459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 52
               

               
Conread position:
               
33-336
               

               
Cow position:
               
chr29:26501302-26501594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
166, 43
               

               
Conread position:
               
33-456
               

               
Cow position:
               
chr29:16617425-16617835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 58
               

               
Conread position:
               
35-455
               

               
Cow position:
               
chr29:10818638-10818254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
36-361
               

               
Cow position:
               
chr29:11054054-11053748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
36-454
               

               
Cow position:
               
chr29:25091909-25092308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
37-436
               

               
Cow position:
               
chr29:3100461-3100079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 54
               

               
Conread position:
               
37-449
               

               
Cow position:
               
chr29:39329796-39329384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
269, 11
               

               
Conread position:
               
38-457
               

               
Cow position:
               
chr29:377645-377230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
160, 38
               

               
Conread position:
               
42-195
               

               
Cow position:
               
chr29:26508292-26508438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
42-453
               

               
Cow position:
               
chr29:28979674-28979313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
264, 29
               

               
Conread position:
               
43-362
               

               
Cow position:
               
chr29:26991046-26991356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
44-450
               

               
Cow position:
               
chr29:30188533-30188131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
153, 47
               

               
Conread position:
               
45-363
               

               
Cow position:
               
chr29:32211251-32210956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
261, 46
               

               
Conread position:
               
46-409
               

               
Cow position:
               
chr29:4334528-4334882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
48-456
               

               
Cow position:
               
chr29:27652818-27652435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
149, 21
               

               
Conread position:
               
51-457
               

               
Cow position:
               
chr29:20910886-20910483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 29
               

               
Conread position:
               
52-456
               

               
Cow position:
               
chr29:29475440-29475047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
53-304
               

               
Cow position:
               
chr29:17301341-17301589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
54-416
               

               
Cow position:
               
chr29:12900734-12900384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
54-457
               

               
Cow position:
               
chr29:37618123-37618515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 21
               

               
Conread position:
               
57-361
               

               
Cow position:
               
chr29:10235309-10235025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
64-274
               

               
Cow position:
               
chr29:3539098-3538881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 28
               

               
Conread position:
               
64-374
               

               
Cow position:
               
chr29:23244061-23243752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
66-448
               

               
Cow position:
               
chr29:5409325-5408944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 157
               

               
Conread position:
               
68-247
               

               
Cow position:
               
chr29:456966-456789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
68-382
               

               
Cow position:
               
chr29:35442634-35442328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
142, 26
               

               
Conread position:
               
68-383
               

               
Cow position:
               
chr29:40960027-40959713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
68-395
               

               
Cow position:
               
chr29:856590-856255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
70-416
               

               
Cow position:
               
chr29:45589770-45589434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
73-284
               

               
Cow position:
               
chr29:26042457-26042663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
73-382
               

               
Cow position:
               
chr29:24252067-24252371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
108, 53
               

               
Conread position:
               
73-454
               

               
Cow position:
               
chr29:4085148-4085501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
233, 51
               

               
Conread position:
               
76-267
               

               
Cow position:
               
chr29:25432235-25432417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
172, 50
               

               
Conread position:
               
76-457
               

               
Cow position:
               
chr29:353959-353589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
159, 50
               

               
Conread position:
               
76-457
               

               
Cow position:
               
chr29:29942901-29942519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
77-457
               

               
Cow position:
               
chr29:10018407-10018775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
78-457
               

               
Cow position:
               
chr29:31674463-31674838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
79-379
               

               
Cow position:
               
chr29:11646932-11647225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
79-434
               

               
Cow position:
               
chr29:36633007-36632676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
227, 54
               

               
Conread position:
               
81-382
               

               
Cow position:
               
chr29:10156468-10156172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
82-449
               

               
Cow position:
               
chr29:2055898-2056259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
83-308
               

               
Cow position:
               
chr29:43956732-43956951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
129, 43
               

               
Conread position:
               
84-352
               

               
Cow position:
               
chr29:44008942-44008681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
85-450
               

               
Cow position:
               
chr29:12025631-12025279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr29:40615680-40615509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
87-457
               

               
Cow position:
               
chr29:17462943-17462572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr29:18580171-18579992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
107, 38
               

               
Conread position:
               
88-417
               

               
Cow position:
               
chr29:7425479-7425798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
89-456
               

               
Cow position:
               
chr29:13028272-13028658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
89-457
               

               
Cow position:
               
chr29:363102-363456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
91-242
               

               
Cow position:
               
chr29:31899127-31898976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
91-278
               

               
Cow position:
               
chr29:45383972-45384157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
91-351
               

               
Cow position:
               
chr29:26416207-26416454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
91-377
               

               
Cow position:
               
chr29:29314808-29314519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
91-416
               

               
Cow position:
               
chr29:29795543-29795214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
91-456
               

               
Cow position:
               
chr29:28396535-28396902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
91-456
               

               
Cow position:
               
chr29:29551700-29552053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
91-457
               

               
Cow position:
               
chr29:25814988-25814628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
92-455
               

               
Cow position:
               
chr29:16272573-16272949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
93-450
               

               
Cow position:
               
chr29:17296980-17297338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
94-344
               

               
Cow position:
               
chr29:9455204-9454962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
97-374
               

               
Cow position:
               
chr29:21941443-21941727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
97-441
               

               
Cow position:
               
chr29:21706537-21706206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
209, 37
               

               
Conread position:
               
97-449
               

               
Cow position:
               
chr29:11398070-11397714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
97-453
               

               
Cow position:
               
chr29:35084370-35084021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
98-437
               

               
Cow position:
               
chr29:24045844-24046185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
103-440
               

               
Cow position:
               
chr29:18462696-18462364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
103-454
               

               
Cow position:
               
chr29:36220386-36220747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
104-414
               

               
Cow position:
               
chr29:5122011-5121697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
110-451
               

               
Cow position:
               
chr29:23389696-23389365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
88, 146
               

               
Conread position:
               
113-401
               

               
Cow position:
               
chr29:8176517-8176808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
114-423
               

               
Cow position:
               
chr29:17168269-17168578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
114-456
               

               
Cow position:
               
chr29:3825835-3826172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
116-275
               

               
Cow position:
               
chr29:630272-630428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
123-445
               

               
Cow position:
               
chr29:6755875-6756179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
124-360
               

               
Cow position:
               
chr29:8862606-8862369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
127-299
               

               
Cow position:
               
chr29:25839571-25839750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 133
               

               
Conread position:
               
127-351
               

               
Cow position:
               
chr29:12626102-12625873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
127-393
               

               
Cow position:
               
chr29:31813826-31814086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
179, 19
               

               
Conread position:
               
127-456
               

               
Cow position:
               
chr29:3685634-3685315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
128-393
               

               
Cow position:
               
chr29:16568816-16569074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
128-457
               

               
Cow position:
               
chr29:28805641-28805962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
131-265
               

               
Cow position:
               
chr29:26206749-26206880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
131-274
               

               
Cow position:
               
chr29:11489841-11489696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
131-332
               

               
Cow position:
               
chr29:4052103-4051907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chr29:29176734-29176502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
131-370
               

               
Cow position:
               
chr29:847761-847520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 90
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr29:10058655-10058345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
131-454
               

               
Cow position:
               
chr29:30227392-30227077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 88
               

               
Conread position:
               
134-314
               

               
Cow position:
               
chr29:11719848-11720033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
136-457
               

               
Cow position:
               
chr29:22647736-22648054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 61
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr29:43251281-43251050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
139-454
               

               
Cow position:
               
chr29:7310577-7310867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
139-454
               

               
Cow position:
               
chr29:40995001-40994675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
140-456
               

               
Cow position:
               
chr29:1007706-1008026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
141-416
               

               
Cow position:
               
chr29:21508459-21508181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
141-461
               

               
Cow position:
               
chr29:5046543-5046864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
142-456
               

               
Cow position:
               
chr29:29189197-29188890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
143-450
               

               
Cow position:
               
chr29:26477432-26477744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 303
               

               
Conread position:
               
143-456
               

               
Cow position:
               
chr29:27668770-27668448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
143-457
               

               
Cow position:
               
chr29:28674814-28674495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
55, 113
               

               
Conread position:
               
145-454
               

               
Cow position:
               
chr29:29183619-29183926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
147-353
               

               
Cow position:
               
chr29:24578755-24578968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
148-418
               

               
Cow position:
               
chr29:30713812-30713549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
151-488
               

               
Cow position:
               
chr29:8293015-8292671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
153-449
               

               
Cow position:
               
chr29:21645227-21645516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
153, 45
               

               
Conread position:
               
154-355
               

               
Cow position:
               
chr29:27873508-27873708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
154-445
               

               
Cow position:
               
chr29:4418729-4419022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
154-456
               

               
Cow position:
               
chr29:4492344-4492638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
155-456
               

               
Cow position:
               
chr29:3549518-3549811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
159-451
               

               
Cow position:
               
chr29:15947080-15947370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
162-312
               

               
Cow position:
               
chr29:13486861-13487015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
166-450
               

               
Cow position:
               
chr29:28993776-28994056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 202
               

               
Conread position:
               
166-456
               

               
Cow position:
               
chr29:16290646-16290929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
169-451
               

               
Cow position:
               
chr29:44938067-44937794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
170-359
               

               
Cow position:
               
chr29:8005003-8004816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
170-370
               

               
Cow position:
               
chr29:22519210-22519005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 87
               

               
Conread position:
               
172-333
               

               
Cow position:
               
chr29:40903097-40903260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
175-383
               

               
Cow position:
               
chr29:7103480-7103693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
180-450
               

               
Cow position:
               
chr29:18450205-18449938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
182-459
               

               
Cow position:
               
chr29:38755000-38754729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
114, 26
               

               
Conread position:
               
183-416
               

               
Cow position:
               
chr29:38348098-38347861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
184-416
               

               
Cow position:
               
chr29:40633580-40633819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
184-456
               

               
Cow position:
               
chr29:22533897-22534169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
192-344
               

               
Cow position:
               
chr29:19559075-19558923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
192-451
               

               
Cow position:
               
chr29:35258930-35259182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
196-378
               

               
Cow position:
               
chr29:5210437-5210621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
196-455
               

               
Cow position:
               
chr29:27926726-27926979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
196-455
               

               
Cow position:
               
chr29:39131513-39131252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
196-456
               

               
Cow position:
               
chr29:4423490-4423246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
196-456
               

               
Cow position:
               
chr29:23825619-23825868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
196-457
               

               
Cow position:
               
chr29:31092401-31092654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
197-456
               

               
Cow position:
               
chr29:42630073-42630323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr29:5568443-5568699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
203-455
               

               
Cow position:
               
chr29:32733254-32733507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
204-457
               

               
Cow position:
               
chr29:30827361-30827615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
204-458
               

               
Cow position:
               
chr29:18200740-18200993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
204-462
               

               
Cow position:
               
chr29:27524879-27524622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
205-459
               

               
Cow position:
               
chr29:5520528-5520275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
208-456
               

               
Cow position:
               
chr29:40610674-40610426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
209-445
               

               
Cow position:
               
chr29:1011618-1011398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
210-451
               

               
Cow position:
               
chr29:36781342-36781109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
213-456
               

               
Cow position:
               
chr29:34832420-34832187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
213-456
               

               
Cow position:
               
chr29:44684067-44684303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
215-437
               

               
Cow position:
               
chr29:9310567-9310790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
217-434
               

               
Cow position:
               
chr29:24365928-24365713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
217-436
               

               
Cow position:
               
chr29:7124781-7125007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
218-432
               

               
Cow position:
               
chr29:23825240-23825030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
218-445
               

               
Cow position:
               
chr29:24188095-24187868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
218-455
               

               
Cow position:
               
chr29:16278958-16279182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
219-454
               

               
Cow position:
               
chr29:26602164-26602403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 144
               

               
Conread position:
               
220-370
               

               
Cow position:
               
chr29:5789000-5789149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
220-411
               

               
Cow position:
               
chr29:41082378-41082186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
220-448
               

               
Cow position:
               
chr29:396385-396600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
220-448
               

               
Cow position:
               
chr29:36357101-36357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
220-450
               

               
Cow position:
               
chr29:26540568-26540340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
220-454
               

               
Cow position:
               
chr29:4070600-4070825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
221-451
               

               
Cow position:
               
chr29:5302255-5302025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
221-454
               

               
Cow position:
               
chr29:22720678-22720444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
221-457
               

               
Cow position:
               
chr29:20527190-20526955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
221-457
               

               
Cow position:
               
chr29:28420728-28420964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
221-457
               

               
Cow position:
               
chr29:32656406-32656643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
222-350
               

               
Cow position:
               
chr29:8686304-8686432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
222-441
               

               
Cow position:
               
chr29:11227415-11227190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
222-456
               

               
Cow position:
               
chr29:33321324-33321555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
223-445
               

               
Cow position:
               
chr29:25944328-25944099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
224-456
               

               
Cow position:
               
chr29:31651387-31651608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
225-457
               

               
Cow position:
               
chr29:8163850-8163621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
226-456
               

               
Cow position:
               
chr29:23637700-23637468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
228-445
               

               
Cow position:
               
chr29:3292928-3293138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
231-450
               

               
Cow position:
               
chr29:19176930-19176715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
233-455
               

               
Cow position:
               
chr29:16200493-16200271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
235-438
               

               
Cow position:
               
chr29:4053353-4053156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
235-457
               

               
Cow position:
               
chr29:6819601-6819824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 18
               

               
Conread position:
               
236-445
               

               
Cow position:
               
chr29:23819404-23819189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
237-454
               

               
Cow position:
               
chr29:19363700-19363913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
241-437
               

               
Cow position:
               
chr29:23913400-23913210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
241-456
               

               
Cow position:
               
chr29:22735457-22735242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
242-456
               

               
Cow position:
               
chr29:4022998-4023202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
244-445
               

               
Cow position:
               
chr29:4441210-4441010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
245-457
               

               
Cow position:
               
chr29:44901669-44901455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
251-450
               

               
Cow position:
               
chr29:14576861-14577057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
251-456
               

               
Cow position:
               
chr29:42886971-42887177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
252-415
               

               
Cow position:
               
chr29:5043383-5043547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
252-448
               

               
Cow position:
               
chr29:26411466-26411272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
54, 106
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chr29:5953856-5953650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chr29:28087672-28087880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
7, 134
               

               
Conread position:
               
252-457
               

               
Cow position:
               
chr29:25793149-25793348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
252-460
               

               
Cow position:
               
chr29:15797955-15798161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 127
               

               
Conread position:
               
253-456
               

               
Cow position:
               
chr29:26211056-26211259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chr29:8979570-8979365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chr29:29578969-29578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
253-461
               

               
Cow position:
               
chr29:22579475-22579685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
255-444
               

               
Cow position:
               
chr29:26539241-26539425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
255-457
               

               
Cow position:
               
chr29:14375875-14375672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
256-450
               

               
Cow position:
               
chr29:10203779-10203969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
50, 111
               

               
Conread position:
               
258-445
               

               
Cow position:
               
chr29:23142325-23142137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
258-449
               

               
Cow position:
               
chr29:4648200-4648013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 98
               

               
Conread position:
               
258-453
               

               
Cow position:
               
chr29:9800659-9800861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
126, 197
               

               
Conread position:
               
258-466
               

               
Cow position:
               
chr29:13558342-13558553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-407
               

               
Cow position:
               
chr29:5652950-5653099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
259-457
               

               
Cow position:
               
chr29:30021129-30021328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
259-461
               

               
Cow position:
               
chr29:26631052-26631259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
260-456
               

               
Cow position:
               
chr29:8799004-8798806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 178
               

               
Conread position:
               
261-431
               

               
Cow position:
               
chr29:33393690-33393869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
262-454
               

               
Cow position:
               
chr29:34675996-34675804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 140
               

               
Conread position:
               
262-457
               

               
Cow position:
               
chr29:14746793-14746985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 111
               

               
Conread position:
               
263-449
               

               
Cow position:
               
chr29:28715219-28715032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
264-457
               

               
Cow position:
               
chr29:16598469-16598655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
266-463
               

               
Cow position:
               
chr29:22019171-22018974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
270-455
               

               
Cow position:
               
chr29:35189628-35189814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
270-456
               

               
Cow position:
               
chr29:11685185-11685375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
270-456
               

               
Cow position:
               
chr29:11894719-11894906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
270-456
               

               
Cow position:
               
chr29:16735245-16735431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 178
               

               
Conread position:
               
272-457
               

               
Cow position:
               
chr29:30089032-30088848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
273-445
               

               
Cow position:
               
chr29:42404971-42405144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chr29:11081370-11081194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
276-427
               

               
Cow position:
               
chr29:28257168-28257319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
282-477
               

               
Cow position:
               
chr29:25907279-25907482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr29:2414718-2414550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
283-456
               

               
Cow position:
               
chr29:14828194-14828023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
283-457
               

               
Cow position:
               
chr29:2219421-2219595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
284-456
               

               
Cow position:
               
chr29:6517264-6517434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
287-473
               

               
Cow position:
               
chr29:24604934-24605118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chr29:16438741-16438532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
294-456
               

               
Cow position:
               
chr29:24119455-24119292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
294-457
               

               
Cow position:
               
chr29:41094162-41094323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 125
               

               
Conread position:
               
296-455
               

               
Cow position:
               
chr29:8841398-8841243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
297-456
               

               
Cow position:
               
chr29:16164386-16164229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
305-456
               

               
Cow position:
               
chr29:4741334-4741183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
305-482
               

               
Cow position:
               
chr29:35281521-35281703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
307-454
               

               
Cow position:
               
chr29:20643974-20644120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
43, 119
               

               
Conread position:
               
309-457
               

               
Cow position:
               
chr29:34483567-34483419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
321-456
               

               
Cow position:
               
chr29:26777081-26777216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
328-454
               

               
Cow position:
               
chr29:774068-774194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.