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Cow genome map

           
Conread name:
           
unkn-AR078G03iTHYEG03S
        

               
Conread position:
               
1-133
               

               
Cow position:
               
chrX:48536872-48536745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chrX:6659166-6659299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chrX:38113980-38114111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chrX:25036907-25036750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chrX:7806172-7806330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chrX:42855201-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chrX:6639918-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chrX:7382116-7382288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
138, 78
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chrX:16324171-16324000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:4123628-4123802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
136, 74
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:17271496-17271313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:35273144-35273328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:38967443-38967621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:46430065-46429887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:19019318-19019132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:33020278-33020458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:35609779-35609963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:46315588-46315403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chrX:21665801-21665602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
194, 70
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chrX:42339143-42338954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
191, 71
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chrX:2206751-2206556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chrX:35284416-35284638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:41743705-41743941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chrX:26285772-26286013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chrX:2383281-2383524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
196, 74
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chrX:12115832-12116087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chrX:32128188-32127951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
182, 60
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chrX:36250069-36249817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
176, 75
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:14924793-14925043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
197, 27
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:29509651-29509395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
196, 70
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:40647770-40648029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chrX:9997541-9997289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
197, 63
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chrX:17497889-17498130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
195, 59
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chrX:28157278-28157543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:41198897-41199155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
196, 80
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:20752052-20752303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 70
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:25237969-25238230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
191, 70
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chrX:19015235-19015488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
216, 61
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chrX:40452420-40452168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chrX:35681139-35681393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chrX:43049137-43049394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chrX:42874770-42875035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chrX:18456185-18456459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
134, 93
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chrX:28105713-28105972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
221, 90
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chrX:28845638-28845888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
197, 52
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chrX:9855093-9855354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chrX:9953934-9954195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chrX:8070908-8070642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
194, 13
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chrX:10437872-10437607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
213, 66
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chrX:12018068-12018352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chrX:35042012-35042278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
114, 75
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chrX:25232383-25232656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
196, 78
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chrX:1810369-1810096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
187, 47
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chrX:26876089-26875812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chrX:8899817-8900092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 90
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chrX:6234656-6234378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 74
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:7718647-7718919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chrX:678775-678477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
213, 90
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:13265827-13265547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
196, 78
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chrX:42507854-42507564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
137, 68
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:7497036-7497334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:20376760-20377062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
196, 66
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:20709864-20710166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:37843513-37843810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
194, 68
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chrX:2467672-2467979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 90
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chrX:15814890-15815179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
197, 59
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chrX:27680194-27680494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 75
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chrX:26440987-26440676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 90
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:7508933-7509252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
196, 8
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:47967392-47967720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
197, 82
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:38936493-38936815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
197, 68
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:11856222-11856547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:44835023-44834679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
187, 83
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:46722948-46722617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 83
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:48195248-48194918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
187, 75
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chrX:27516325-27516646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 78
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chrX:18695127-18694803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 74
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chrX:19690010-19690343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 90
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chrX:39558554-39558221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chrX:35224094-35224426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chrX:37910245-37910575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
192, 63
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chrX:42171507-42171166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chrX:1514608-1514288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
196, 74
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chrX:35413425-35413741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
180, 65
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:11082821-11082486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 68
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:47054734-47054389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 41
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chrX:11455260-11454912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chrX:1503131-1503468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
196, 66
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chrX:488282-488646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
196, 69
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chrX:4044058-4043723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chrX:5900250-5900606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 98
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chrX:7571699-7572050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chrX:37119392-37119736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
197, 53
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chrX:43527296-43527652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 75
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chrX:29289369-29289728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 83
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:23583351-23583712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
194, 92
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:28134138-28134493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 91
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:30543494-30543134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
193, 19
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:20697815-20697456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:23091674-23092024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 78
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:24424595-24424246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
305, 85
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:35388113-35387771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
305, 90
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:45113421-45113775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
195, 64
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:45845888-45846258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:878579-878218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:8797040-8797409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 90
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:9416900-9416524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 66
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:33639764-33640135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chrX:41884625-41884252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chrX:6278713-6278337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:619215-618847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 93
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:13382118-13382488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:40269269-40269655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:17042483-17042850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
375, 80
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:19930448-19930811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
219, 70
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:38006975-38006604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
250, 90
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chrX:14599322-14599704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chrX:34754399-34754001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
214, 90
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:25337972-25338367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chrX:16416301-16416684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 15
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chrX:33205199-33204787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chrX:36778200-36778585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 68
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:28866200-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
240, 50
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:34502711-34503119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chrX:45967956-45968337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
197, 70
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chrX:34663051-34662653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 63
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chrX:13647991-13647588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
200, 63
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chrX:21672344-21672758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 90
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chrX:5017615-5017214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chrX:47046727-47046314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chrX:23514225-23513801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chrX:28878367-28877959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chrX:35542684-35543094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chrX:12309597-12309174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chrX:47344087-47344513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chrX:32420011-32420426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 59
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:1616255-1615842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:10831704-10831265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chrX:15596830-15597244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 90
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:13868486-13868921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:14973942-14973540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:30921977-30922389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chrX:34554519-34554942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:27514661-27515078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 90
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:31436274-31436688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:40567392-40567824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
196, 93
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:34543580-34544006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 41
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chrX:28632687-28632260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
198, 52
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chrX:31489305-31489743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 19
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:17794778-17795203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
179, 75
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:22074593-22075019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 75
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:30421147-30420743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 100
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:44396807-44397235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:46532717-46532266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chrX:27509227-27508799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 78
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chrX:47211055-47210607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
187, 74
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chrX:7721777-7722203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 82
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chrX:15007358-15006930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chrX:21593076-21593520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chrX:28847086-28846664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 75
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chrX:38549241-38549676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 84
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chrX:46032929-46032499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
305, 99
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:5638377-5637949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:14884169-14883727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:15147394-15146969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 39
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:23497872-23497465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 75
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:27394221-27393788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 83
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:29542426-29541996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 68
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:42247391-42246951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:45598811-45598378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chrX:47873548-47873106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
197, 37
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chrX:12249599-12250046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 52
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chrX:15485835-15485402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chrX:21663102-21663526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 20
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chrX:29602038-29601597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 13
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chrX:45501941-45502365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chrX:8925498-8925914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 70
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chrX:9252385-9251930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 56
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chrX:9425949-9425529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 93
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chrX:38094733-38094293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 44
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chrX:41673896-41674332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chrX:3579737-3580178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 75
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chrX:10866075-10865637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 65
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chrX:24366039-24365588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chrX:32020329-32019899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 75
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chrX:46073028-46072596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 79
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:4269275-4268836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:7351092-7351534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 31
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:20887852-20887414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:21626158-21625713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
198, 93
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:25816103-25815664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 68
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:27446481-27446917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:30133531-30133089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 35
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:30963079-30962640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 68
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:31443029-31442604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 70
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:31949138-31948699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 80
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:34376749-34377174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
195, 19
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:40035653-40035207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 92
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:40481079-40480614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 15
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:40557883-40557424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
196, 63
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:42994407-42994831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 47
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:44961540-44961988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 90
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:48236604-48237053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:3654397-3654839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 90
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:11655881-11656314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 93
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:12290528-12290954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 74
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:12980038-12979599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 90
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:20340098-20339659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:21064079-21064522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
197, 48
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:23564004-23563554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:27174787-27175236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:27432126-27431688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 71
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:28013647-28013204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
197, 72
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:34441658-34441217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 27
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:34454462-34454895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 45
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:37489523-37489965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 70
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:42587636-42587186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
196, 57
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:44192650-44192206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:6544049-6544482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
196, 72
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:17231527-17231974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 95
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:21642686-21642244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 31
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:34411632-34412087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:38935074-38935516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 80
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:40183557-40183118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 90
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:42492722-42492284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 71
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chrX:48010387-48010842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 83
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chrX:16762565-16763012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 58
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chrX:33855440-33854984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
197, 89
               

               
Conread position:
               
1-464
               

               
Cow position:
               
chrX:38852989-38853455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
196, 80
               

               
Conread position:
               
1-472
               

               
Cow position:
               
chrX:26492795-26493259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chrX:32329953-32330434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 31
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chrX:6607213-6607342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chrX:4750507-4750281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
196, 38
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chrX:15139750-15139497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
196, 14
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chrX:2147128-2147398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chrX:42461952-42461692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 93
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:36961428-36961701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chrX:45993006-45993304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chrX:21004474-21004797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chrX:10412195-10411848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 89
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chrX:11073395-11073049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 67
               

               
Conread position:
               
2-364
               

               
Cow position:
               
chrX:34401791-34402141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 68
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chrX:41192478-41192853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chrX:11717989-11717618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 66
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chrX:10959607-10959228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
196, 92
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chrX:841952-842371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chrX:8730873-8731310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 94
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chrX:16541884-16541425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 79
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chrX:31250183-31250621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 85
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chrX:4633057-4632621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 66
               

               
Conread position:
               
2-455
               

               
Cow position:
               
chrX:41238572-41238126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 98
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chrX:25035594-25035146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 89
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chrX:33466407-33466858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 65
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chrX:38963900-38964332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 77
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chrX:46587611-46588056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 79
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chrX:11844449-11843999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 45
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chrX:16996300-16996731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 67
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chrX:22812854-22813302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 89
               

               
Conread position:
               
2-473
               

               
Cow position:
               
chrX:9201340-9201796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 77
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chrX:41403767-41403943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chrX:41410315-41410491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chrX:25411631-25411815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chrX:38439268-38439508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
3-251
               

               
Cow position:
               
chrX:3653558-3653793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
194, 74
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chrX:11581729-11581979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chrX:41167170-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 73
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chrX:39938728-39938460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
195, 84
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chrX:14900927-14900653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:45404039-45403708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:48652933-48652604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chrX:37232204-37232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 91
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chrX:47481594-47481928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
194, 73
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chrX:917577-917231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 123
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chrX:17662802-17662458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chrX:17725769-17726121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
192, 66
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chrX:27772165-27771808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
200, 35
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chrX:10302133-10302508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
193, 66
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chrX:630513-630142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
3-435
               

               
Cow position:
               
chrX:4768545-4768943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 58
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chrX:24200984-24201412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
149, 23
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chrX:20151645-20152068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 64
               

               
Conread position:
               
3-453
               

               
Cow position:
               
chrX:9635386-9634959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 66
               

               
Conread position:
               
3-455
               

               
Cow position:
               
chrX:11633473-11633918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 66
               

               
Conread position:
               
3-455
               

               
Cow position:
               
chrX:41790650-41790193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 88
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chrX:5872108-5872568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 88
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chrX:34565088-34565520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 17
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chrX:41879140-41878701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 73
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chrX:44054596-44055039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
3-457
               

               
Cow position:
               
chrX:6413841-6414268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
195, 45
               

               
Conread position:
               
3-457
               

               
Cow position:
               
chrX:15545689-15546118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
3-457
               

               
Cow position:
               
chrX:36975744-36976185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 68
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chrX:40116216-40116486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chrX:17908487-17908256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
193, 66
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:47757132-47756886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
192, 78
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chrX:11589792-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 49
               

               
Conread position:
               
5-350
               

               
Cow position:
               
chrX:38071974-38071640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chrX:31340501-31340851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
191, 89
               

               
Conread position:
               
5-405
               

               
Cow position:
               
chrX:6563309-6563707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
5-417
               

               
Cow position:
               
chrX:29545083-29544684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 54
               

               
Conread position:
               
5-454
               

               
Cow position:
               
chrX:151698-152139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 46
               

               
Conread position:
               
5-454
               

               
Cow position:
               
chrX:27442758-27442305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
193, 27
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chrX:34270203-34270452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
6-352
               

               
Cow position:
               
chrX:7277717-7278044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
6-402
               

               
Cow position:
               
chrX:37781320-37780929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 89
               

               
Conread position:
               
6-444
               

               
Cow position:
               
chrX:1176185-1175766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 85
               

               
Conread position:
               
6-454
               

               
Cow position:
               
chrX:18216074-18216506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
318, 88
               

               
Conread position:
               
6-456
               

               
Cow position:
               
chrX:27705386-27705823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
7-449
               

               
Cow position:
               
chrX:36283144-36283569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
7-456
               

               
Cow position:
               
chrX:1499468-1499890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 68
               

               
Conread position:
               
9-450
               

               
Cow position:
               
chrX:38218507-38218943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
9-456
               

               
Cow position:
               
chrX:161221-161635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chrX:37048778-37048553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
187, 61
               

               
Conread position:
               
10-258
               

               
Cow position:
               
chrX:30833044-30832814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
186, 81
               

               
Conread position:
               
10-263
               

               
Cow position:
               
chrX:4091449-4091683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chrX:45148976-45149285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
212, 53
               

               
Conread position:
               
10-401
               

               
Cow position:
               
chrX:4515469-4515869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
10-436
               

               
Cow position:
               
chrX:43780051-43779649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 89
               

               
Conread position:
               
11-458
               

               
Cow position:
               
chrX:33000706-33001136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 80
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chrX:47484467-47484028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 78
               

               
Conread position:
               
14-349
               

               
Cow position:
               
chrX:11939121-11938803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
248, 59
               

               
Conread position:
               
16-257
               

               
Cow position:
               
chrX:45874806-45875037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
182, 56
               

               
Conread position:
               
16-306
               

               
Cow position:
               
chrX:37540932-37541206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
229, 69
               

               
Conread position:
               
16-367
               

               
Cow position:
               
chrX:39126144-39126475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
180, 50
               

               
Conread position:
               
16-448
               

               
Cow position:
               
chrX:8869601-8869176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
17-382
               

               
Cow position:
               
chrX:43730406-43730061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 76
               

               
Conread position:
               
20-196
               

               
Cow position:
               
chrX:24149451-24149615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
20-370
               

               
Cow position:
               
chrX:31311837-31312180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 71
               

               
Conread position:
               
20-382
               

               
Cow position:
               
chrX:23785465-23785809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 71
               

               
Conread position:
               
20-389
               

               
Cow position:
               
chrX:42235722-42235357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
25-381
               

               
Cow position:
               
chrX:36067836-36068177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
171, 51
               

               
Conread position:
               
25-444
               

               
Cow position:
               
chrX:35383203-35382818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
25-457
               

               
Cow position:
               
chrX:9770868-9770449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
173, 68
               

               
Conread position:
               
28-416
               

               
Cow position:
               
chrX:7336646-7337039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
28-462
               

               
Cow position:
               
chrX:32820849-32821282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 10
               

               
Conread position:
               
29-381
               

               
Cow position:
               
chrX:45098932-45099290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
42, 110
               

               
Conread position:
               
30-400
               

               
Cow position:
               
chrX:24288111-24287753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 97
               

               
Conread position:
               
30-427
               

               
Cow position:
               
chrX:16514443-16514066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
30-457
               

               
Cow position:
               
chrX:36060973-36061396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 61
               

               
Conread position:
               
32-418
               

               
Cow position:
               
chrX:27301689-27302075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
166, 53
               

               
Conread position:
               
33-416
               

               
Cow position:
               
chrX:4279290-4278921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
165, 52
               

               
Conread position:
               
36-478
               

               
Cow position:
               
chrX:4398953-4399377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
37-373
               

               
Cow position:
               
chrX:46433311-46433644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
37-456
               

               
Cow position:
               
chrX:6407377-6407780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 54
               

               
Conread position:
               
37-456
               

               
Cow position:
               
chrX:22387419-22387008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
37-456
               

               
Cow position:
               
chrX:27145452-27145836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
269, 32
               

               
Conread position:
               
37-456
               

               
Cow position:
               
chrX:34792482-34792086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 54
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chrX:14955938-14955573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
160, 19
               

               
Conread position:
               
38-453
               

               
Cow position:
               
chrX:25208017-25207628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chrX:22921143-22921563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
39-453
               

               
Cow position:
               
chrX:15231827-15231426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
267, 46
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chrX:14003811-14003609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
43-360
               

               
Cow position:
               
chrX:48385529-48385228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
44-332
               

               
Cow position:
               
chrX:23254378-23254091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
108, 47
               

               
Conread position:
               
44-456
               

               
Cow position:
               
chrX:42855283-42855699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
45-416
               

               
Cow position:
               
chrX:41068564-41068916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
152, 21
               

               
Conread position:
               
47-361
               

               
Cow position:
               
chrX:39415537-39415228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
5, 9
               

               
Conread position:
               
50-456
               

               
Cow position:
               
chrX:36355957-36356341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chrX:31252257-31252599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 40
               

               
Conread position:
               
57-449
               

               
Cow position:
               
chrX:47280090-47279707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
58-454
               

               
Cow position:
               
chrX:5118660-5118264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
59-447
               

               
Cow position:
               
chrX:21986446-21986074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
59-456
               

               
Cow position:
               
chrX:20584169-20584547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
60-309
               

               
Cow position:
               
chrX:12405539-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
64-251
               

               
Cow position:
               
chrX:10278666-10278843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
64-290
               

               
Cow position:
               
chrX:20790760-20790983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
64-358
               

               
Cow position:
               
chrX:29680409-29680122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
64-454
               

               
Cow position:
               
chrX:44040042-44040410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
65-260
               

               
Cow position:
               
chrX:47379629-47379427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 153
               

               
Conread position:
               
68-456
               

               
Cow position:
               
chrX:35822194-35822567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
70-273
               

               
Cow position:
               
chrX:48243608-48243413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
5, 57
               

               
Conread position:
               
70-459
               

               
Cow position:
               
chrX:7695602-7696001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
108, 56
               

               
Conread position:
               
71-332
               

               
Cow position:
               
chrX:21566261-21566520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
71-378
               

               
Cow position:
               
chrX:42873247-42873544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 39
               

               
Conread position:
               
72-437
               

               
Cow position:
               
chrX:48646744-48646392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
234, 54
               

               
Conread position:
               
72-456
               

               
Cow position:
               
chrX:43049915-43050306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
73-303
               

               
Cow position:
               
chrX:13785506-13785280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
73-363
               

               
Cow position:
               
chrX:11614556-11614837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
73-436
               

               
Cow position:
               
chrX:27227980-27228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
73-445
               

               
Cow position:
               
chrX:8917253-8917620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
73-453
               

               
Cow position:
               
chrX:20677228-20677596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
73-455
               

               
Cow position:
               
chrX:34313890-34314257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
73-457
               

               
Cow position:
               
chrX:35885873-35885496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
76-328
               

               
Cow position:
               
chrX:27685107-27685360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
76-344
               

               
Cow position:
               
chrX:22454232-22453973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
230, 33
               

               
Conread position:
               
77-381
               

               
Cow position:
               
chrX:10394237-10393948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
77-382
               

               
Cow position:
               
chrX:616403-616095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
77-454
               

               
Cow position:
               
chrX:29723602-29723984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
78-370
               

               
Cow position:
               
chrX:38728599-38728885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
79-382
               

               
Cow position:
               
chrX:9365813-9365513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
79-394
               

               
Cow position:
               
chrX:36311442-36311745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
227, 19
               

               
Conread position:
               
79-472
               

               
Cow position:
               
chrX:18204602-18204215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
81-439
               

               
Cow position:
               
chrX:40685466-40685110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
81-455
               

               
Cow position:
               
chrX:45976785-45977159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
82-351
               

               
Cow position:
               
chrX:7161926-7162188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
111, 44
               

               
Conread position:
               
82-355
               

               
Cow position:
               
chrX:29120912-29121183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
82-459
               

               
Cow position:
               
chrX:31729307-31729676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
83-247
               

               
Cow position:
               
chrX:35969218-35969058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
83-279
               

               
Cow position:
               
chrX:41992178-41991986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
83-391
               

               
Cow position:
               
chrX:3489024-3488719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
83-450
               

               
Cow position:
               
chrX:36393480-36393111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
114, 43
               

               
Conread position:
               
83-451
               

               
Cow position:
               
chrX:41027024-41027391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
83-453
               

               
Cow position:
               
chrX:37955698-37956077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
83-457
               

               
Cow position:
               
chrX:870301-869945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
87-416
               

               
Cow position:
               
chrX:34222584-34222909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
87-427
               

               
Cow position:
               
chrX:31294686-31294362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 39
               

               
Conread position:
               
87-437
               

               
Cow position:
               
chrX:6488447-6488782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
88-453
               

               
Cow position:
               
chrX:40826883-40826517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
89-384
               

               
Cow position:
               
chrX:6260284-6259985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
90-454
               

               
Cow position:
               
chrX:33654973-33654609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 123
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chrX:19003175-19003373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
91-336
               

               
Cow position:
               
chrX:45005505-45005741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
91-343
               

               
Cow position:
               
chrX:40692876-40692627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
91-369
               

               
Cow position:
               
chrX:7710668-7710389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
91-382
               

               
Cow position:
               
chrX:11085182-11084900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 35
               

               
Conread position:
               
91-450
               

               
Cow position:
               
chrX:45875266-45875622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
91-455
               

               
Cow position:
               
chrX:47609681-47610025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
91-456
               

               
Cow position:
               
chrX:41846612-41846258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
91-456
               

               
Cow position:
               
chrX:43115026-43115385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
91-461
               

               
Cow position:
               
chrX:34505172-34504814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
92-251
               

               
Cow position:
               
chrX:31986991-31986831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
92-457
               

               
Cow position:
               
chrX:27946183-27945812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
93-458
               

               
Cow position:
               
chrX:18111267-18111617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 33
               

               
Conread position:
               
94-457
               

               
Cow position:
               
chrX:17949612-17949255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
94-457
               

               
Cow position:
               
chrX:40320283-40320643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
96-449
               

               
Cow position:
               
chrX:4403194-4403547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
100-370
               

               
Cow position:
               
chrX:5679682-5679421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
100-455
               

               
Cow position:
               
chrX:4296944-4296589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 101
               

               
Conread position:
               
100-456
               

               
Cow position:
               
chrX:24331662-24332012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
100-466
               

               
Cow position:
               
chrX:26881684-26881317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
101-363
               

               
Cow position:
               
chrX:13853507-13853765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
101-445
               

               
Cow position:
               
chrX:46022673-46023000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
205, 25
               

               
Conread position:
               
103-457
               

               
Cow position:
               
chrX:38654543-38654195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
104-314
               

               
Cow position:
               
chrX:44873673-44873466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
109-283
               

               
Cow position:
               
chrX:35848454-35848627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
109-423
               

               
Cow position:
               
chrX:4992123-4991821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
109-457
               

               
Cow position:
               
chrX:46546984-46546636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chrX:12203494-12203279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
195, 16
               

               
Conread position:
               
112-456
               

               
Cow position:
               
chrX:37129160-37129505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
113-436
               

               
Cow position:
               
chrX:29937984-29938307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
115-459
               

               
Cow position:
               
chrX:21327802-21328153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
117-382
               

               
Cow position:
               
chrX:45884079-45883808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
124-358
               

               
Cow position:
               
chrX:36514992-36514753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
124-373
               

               
Cow position:
               
chrX:23562536-23562786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
125-456
               

               
Cow position:
               
chrX:13146886-13147220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
126-451
               

               
Cow position:
               
chrX:10859394-10859082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
126-479
               

               
Cow position:
               
chrX:25283110-25282755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 88
               

               
Conread position:
               
128-456
               

               
Cow position:
               
chrX:24457633-24457311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
141, 48
               

               
Conread position:
               
129-382
               

               
Cow position:
               
chrX:16348661-16348410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
130-270
               

               
Cow position:
               
chrX:42789529-42789670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
130-381
               

               
Cow position:
               
chrX:29549639-29549392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 126
               

               
Conread position:
               
130-445
               

               
Cow position:
               
chrX:20168466-20168780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 84
               

               
Conread position:
               
130-454
               

               
Cow position:
               
chrX:12095865-12095538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 130
               

               
Conread position:
               
131-308
               

               
Cow position:
               
chrX:1572228-1572050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
131-362
               

               
Cow position:
               
chrX:43567831-43568062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
131-416
               

               
Cow position:
               
chrX:169630-169345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
131-445
               

               
Cow position:
               
chrX:10516165-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
131-449
               

               
Cow position:
               
chrX:27261097-27261419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 36
               

               
Conread position:
               
131-450
               

               
Cow position:
               
chrX:29229919-29230237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
131-455
               

               
Cow position:
               
chrX:29050156-29050478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
131-456
               

               
Cow position:
               
chrX:1466070-1466399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
67, 120
               

               
Conread position:
               
131-461
               

               
Cow position:
               
chrX:45140005-45139690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
132-374
               

               
Cow position:
               
chrX:6265689-6265444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
132-414
               

               
Cow position:
               
chrX:40283036-40283317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
132-445
               

               
Cow position:
               
chrX:13923781-13924086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
132-455
               

               
Cow position:
               
chrX:31515079-31515403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
132-456
               

               
Cow position:
               
chrX:7648491-7648177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
174, 63
               

               
Conread position:
               
132-456
               

               
Cow position:
               
chrX:40175078-40175412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
132-457
               

               
Cow position:
               
chrX:10829343-10829673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
133-456
               

               
Cow position:
               
chrX:34315434-34315764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 6
               

               
Conread position:
               
133-457
               

               
Cow position:
               
chrX:48071072-48071399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
134-439
               

               
Cow position:
               
chrX:20882025-20881742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
134-448
               

               
Cow position:
               
chrX:40680523-40680843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
134-456
               

               
Cow position:
               
chrX:34540605-34540919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
135-451
               

               
Cow position:
               
chrX:6559532-6559224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 86
               

               
Conread position:
               
136-374
               

               
Cow position:
               
chrX:11318053-11317813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
136-457
               

               
Cow position:
               
chrX:35590843-35590521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
137-450
               

               
Cow position:
               
chrX:8492996-8493296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
139-459
               

               
Cow position:
               
chrX:16575040-16575345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
167, 59
               

               
Conread position:
               
140-448
               

               
Cow position:
               
chrX:22283750-22284067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
142-444
               

               
Cow position:
               
chrX:39220000-39220312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
143-295
               

               
Cow position:
               
chrX:22465863-22466030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
143-455
               

               
Cow position:
               
chrX:34420659-34420970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
143-455
               

               
Cow position:
               
chrX:36866092-36866409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 115
               

               
Conread position:
               
144-336
               

               
Cow position:
               
chrX:46793962-46793773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
162, 6
               

               
Conread position:
               
145-299
               

               
Cow position:
               
chrX:13136309-13136153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
145-406
               

               
Cow position:
               
chrX:4746318-4746061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
148-436
               

               
Cow position:
               
chrX:38208617-38208338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
149-300
               

               
Cow position:
               
chrX:21004957-21004801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
149-456
               

               
Cow position:
               
chrX:48003774-48004082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
154-284
               

               
Cow position:
               
chrX:17301377-17301242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
154-370
               

               
Cow position:
               
chrX:19097290-19097067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
154-437
               

               
Cow position:
               
chrX:27459788-27460085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
155-456
               

               
Cow position:
               
chrX:13121863-13122180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
156-379
               

               
Cow position:
               
chrX:15820531-15820752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
156-448
               

               
Cow position:
               
chrX:38321453-38321155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
157-456
               

               
Cow position:
               
chrX:2675022-2674717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
157-460
               

               
Cow position:
               
chrX:48118509-48118213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
159-436
               

               
Cow position:
               
chrX:30840481-30840757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
160-436
               

               
Cow position:
               
chrX:44703134-44702849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
160-448
               

               
Cow position:
               
chrX:23561799-23562101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
160-459
               

               
Cow position:
               
chrX:4109128-4109422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
161-458
               

               
Cow position:
               
chrX:27380292-27380598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
162-427
               

               
Cow position:
               
chrX:27511367-27511628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 53
               
UCSC Genome Browser

               
Conread position:
               
162-456
               

               
Cow position:
               
chrX:39352720-39353009 (view  custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 95
               
UCSC Genome Browser

               
               
               
Conread position:
164-363

               
               
               
Cow position:
chrX:32623509-32623714 (view  custom track)

               
               
               
Alignm length:
208

               
               
               
Alignm identity:
149

               
               
               
Alignm E-value:
1e-25

               
               
               
Alignm gaps (pig, cow):
34, 87
UCSC Genome Browser

               
               
               
Conread position:
166-451

               
               
               
Cow position:
chrX:40108572-40108282 (view  custom track)

               
               
               
Alignm length:
296

               
               
               
Alignm identity:
208

               
               
               
Alignm E-value:
1e-36

               
               
               
Alignm gaps (pig, cow):
32, 52

               
               
               Conread position:166-467
               
               
               Cow position:chrX:19469562-19469269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:167-454
               
               
               Cow position:chrX:6541791-6541504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:167-455
               
               
               Cow position:chrX:44339379-44339086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 91

               
               
               Conread position:169-457
               
               
               Cow position:chrX:11825693-11825406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:170-412
               
               
               Cow position:chrX:18964876-18964633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:172-337
               
               
               Cow position:chrX:42499099-42498929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:176-450
               
               
               Cow position:chrX:17956650-17956919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:180-359
               
               
               Cow position:chrX:29553243-29553425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:183-360
               
               
               Cow position:chrX:7806384-7806565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:190-450
               
               
               Cow position:chrX:42432538-42432284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:196-363
               
               
               Cow position:chrX:19943258-19943092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:196-382
               
               
               Cow position:chrX:20743581-20743766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):110, 55

               
               
               Conread position:196-413
               
               
               Cow position:chrX:32318282-32318494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:196-454
               
               
               Cow position:chrX:25411886-25412153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:197-437
               
               
               Cow position:chrX:42836164-42836398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:198-440
               
               
               Cow position:chrX:4645931-4645694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:198-454
               
               
               Cow position:chrX:35431263-35431008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:198-460
               
               
               Cow position:chrX:19660482-19660214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:200-444
               
               
               Cow position:chrX:27075066-27074827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:200-454
               
               
               Cow position:chrX:30311-30564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:200-455
               
               
               Cow position:chrX:42450033-42449778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 53

               
               
               Conread position:201-454
               
               
               Cow position:chrX:35275969-35276220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:202-427
               
               
               Cow position:chrX:45543305-45543542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:202-456
               
               
               Cow position:chrX:36367958-36367698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:202-457
               
               
               Cow position:chrX:18873285-18873024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:202-460
               
               
               Cow position:chrX:36392205-36391948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:203-416
               
               
               Cow position:chrX:44660605-44660392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:203-456
               
               
               Cow position:chrX:44591078-44590825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:203-456
               
               
               Cow position:chrX:46793762-46793514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:203-457
               
               
               Cow position:chrX:44090906-44091160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:203-457
               
               
               Cow position:chrX:44859879-44859625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:203-457
               
               
               Cow position:chrX:45254599-45254345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:203-457
               
               
               Cow position:chrX:48198663-48198411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):222, 51

               
               
               Conread position:204-456
               
               
               Cow position:chrX:48473892-48474141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:205-450
               
               
               Cow position:chrX:3806670-3806909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:208-453
               
               
               Cow position:chrX:17292943-17293189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:208-454
               
               
               Cow position:chrX:4559728-4559968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:210-463
               
               
               Cow position:chrX:24426014-24425756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:211-457
               
               
               Cow position:chrX:38587851-38587609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:211-462
               
               
               Cow position:chrX:32910095-32910340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:212-461
               
               
               Cow position:chrX:1552962-1553211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:216-456
               
               
               Cow position:chrX:37856349-37856597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:217-411
               
               
               Cow position:chrX:29733594-29733391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:217-414
               
               
               Cow position:chrX:39180236-39180039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 38

               
               
               Conread position:217-456
               
               
               Cow position:chrX:38967886-38968130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 81

               
               
               Conread position:218-450
               
               
               Cow position:chrX:40336910-40337141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:219-451
               
               
               Cow position:chrX:4328183-4327951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:220-445
               
               
               Cow position:chrX:29478725-29478947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:220-454
               
               
               Cow position:chrX:26205447-26205225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:220-455
               
               
               Cow position:chrX:30672395-30672150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:220-456
               
               
               Cow position:chrX:5063252-5063472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:220-456
               
               
               Cow position:chrX:16984642-16984871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:220-459
               
               
               Cow position:chrX:23335971-23335736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:221-451
               
               
               Cow position:chrX:25846071-25845842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:221-456
               
               
               Cow position:chrX:24170727-24170489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:221-456
               
               
               Cow position:chrX:29451540-29451309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:221-457
               
               
               Cow position:chrX:5512614-5512375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:221-457
               
               
               Cow position:chrX:36109614-36109377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:221-457
               
               
               Cow position:chrX:43008611-43008847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:221-460
               
               
               Cow position:chrX:26979787-26979551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:222-363
               
               
               Cow position:chrX:38722124-38722266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:222-444
               
               
               Cow position:chrX:11653767-11653991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:222-451
               
               
               Cow position:chrX:41941626-41941854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:222-454
               
               
               Cow position:chrX:35658803-35659028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:222-456
               
               
               Cow position:chrX:24336074-24335840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:222-456
               
               
               Cow position:chrX:26843266-26843028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:222-457
               
               
               Cow position:chrX:17524381-17524148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:222-457
               
               
               Cow position:chrX:25049279-25049044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:223-456
               
               
               Cow position:chrX:43150431-43150667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:224-444
               
               
               Cow position:chrX:1122538-1122323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:224-445
               
               
               Cow position:chrX:19761759-19761974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:224-457
               
               
               Cow position:chrX:46068754-46068527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:225-423
               
               
               Cow position:chrX:35620710-35620908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:225-444
               
               
               Cow position:chrX:38301815-38302038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:227-497
               
               
               Cow position:chrX:35285181-35285449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:228-436
               
               
               Cow position:chrX:28836903-28837100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:230-453
               
               
               Cow position:chrX:35392283-35392072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:230-456
               
               
               Cow position:chrX:19356480-19356700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:233-435
               
               
               Cow position:chrX:30824001-30824200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:233-436
               
               
               Cow position:chrX:20957252-20957455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:233-445
               
               
               Cow position:chrX:3494808-3494596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:233-454
               
               
               Cow position:chrX:40574928-40574709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:234-450
               
               
               Cow position:chrX:907961-908171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:234-457
               
               
               Cow position:chrX:24104854-24105081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:235-439
               
               
               Cow position:chrX:31479987-31480185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 16

               
               
               Conread position:238-454
               
               
               Cow position:chrX:28940261-28940478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:239-454
               
               
               Cow position:chrX:41454934-41454720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:239-457
               
               
               Cow position:chrX:28067870-28068088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:244-454
               
               
               Cow position:chrX:1960401-1960191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 136

               
               
               Conread position:245-454
               
               
               Cow position:chrX:11674132-11674345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:246-458
               
               
               Cow position:chrX:40648918-40649141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:248-457
               
               
               Cow position:chrX:32215258-32215466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:249-444
               
               
               Cow position:chrX:30958756-30958952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:249-446
               
               
               Cow position:chrX:13347304-13347495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:249-456
               
               
               Cow position:chrX:39427270-39427062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:250-455
               
               
               Cow position:chrX:45412207-45412008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:251-454
               
               
               Cow position:chrX:34398753-34398550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):55, 197

               
               
               Conread position:252-444
               
               
               Cow position:chrX:4612850-4612650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:252-444
               
               
               Cow position:chrX:8326936-8327129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-451
               
               
               Cow position:chrX:14925308-14925504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:252-454
               
               
               Cow position:chrX:47601291-47601090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:252-455
               
               
               Cow position:chrX:11781285-11781481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:252-456
               
               
               Cow position:chrX:51864-51667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:252-456
               
               
               Cow position:chrX:4091956-4092158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 166

               
               
               Conread position:252-456
               
               
               Cow position:chrX:18439028-18439233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-456
               
               
               Cow position:chrX:34270595-34270798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:252-456
               
               
               Cow position:chrX:46909847-46910044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:253-455
               
               
               Cow position:chrX:46533272-46533069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-457
               
               
               Cow position:chrX:9063158-9063367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:253-457
               
               
               Cow position:chrX:42050237-42050032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-468
               
               
               Cow position:chrX:16763894-16763682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:254-431
               
               
               Cow position:chrX:48118698-48118525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:254-438
               
               
               Cow position:chrX:44995532-44995718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:254-442
               
               
               Cow position:chrX:35681602-35681789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:254-451
               
               
               Cow position:chrX:27416128-27416326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:254-478
               
               
               Cow position:chrX:11454220-11454433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:255-489
               
               
               Cow position:chrX:34991399-34991634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:256-427
               
               
               Cow position:chrX:19795468-19795302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:257-456
               
               
               Cow position:chrX:37752069-37751875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:257-456
               
               
               Cow position:chrX:41435512-41435307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:258-436
               
               
               Cow position:chrX:31986536-31986356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:258-445
               
               
               Cow position:chrX:876804-876622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:258-455
               
               
               Cow position:chrX:16556179-16555990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:258-456
               
               
               Cow position:chrX:8642084-8642281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:259-456
               
               
               Cow position:chrX:48495036-48495234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:260-436
               
               
               Cow position:chrX:11813116-11813290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:260-453
               
               
               Cow position:chrX:19203306-19203112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-454
               
               
               Cow position:chrX:14951313-14951120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:260-457
               
               
               Cow position:chrX:35409792-35409989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:261-454
               
               
               Cow position:chrX:11517939-11517745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 188

               
               
               Conread position:262-450
               
               
               Cow position:chrX:42760294-42760483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:262-453
               
               
               Cow position:chrX:45843552-45843359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:263-455
               
               
               Cow position:chrX:5097756-5097559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:263-456
               
               
               Cow position:chrX:1121324-1121130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:263-456
               
               
               Cow position:chrX:8759668-8759859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:264-435
               
               
               Cow position:chrX:16007714-16007542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:264-450
               
               
               Cow position:chrX:6634388-6634575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:264-450
               
               
               Cow position:chrX:28850771-28850943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:264-455
               
               
               Cow position:chrX:36468324-36468134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:264-457
               
               
               Cow position:chrX:18030373-18030179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:264-459
               
               
               Cow position:chrX:597430-597239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:264-466
               
               
               Cow position:chrX:14135723-14135921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:265-449
               
               
               Cow position:chrX:39887169-39886984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:265-451
               
               
               Cow position:chrX:1101602-1101781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:266-449
               
               
               Cow position:chrX:10415207-10415023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:266-456
               
               
               Cow position:chrX:37867477-37867669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:268-431
               
               
               Cow position:chrX:36569008-36568846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:268-450
               
               
               Cow position:chrX:41166777-41166597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:268-451
               
               
               Cow position:chrX:4602890-4602707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:268-454
               
               
               Cow position:chrX:47100549-47100361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:268-455
               
               
               Cow position:chrX:37867301-37867489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:268-505
               
               
               Cow position:chrX:19000174-19000413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:269-436
               
               
               Cow position:chrX:10237864-10237697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:269-482
               
               
               Cow position:chrX:1938063-1938275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:271-448
               
               
               Cow position:chrX:41010949-41011118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:271-454
               
               
               Cow position:chrX:16770115-16770298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 177

               
               
               Conread position:271-457
               
               
               Cow position:chrX:1396167-1396358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:275-453
               
               
               Cow position:chrX:26720629-26720458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:275-456
               
               
               Cow position:chrX:41199279-41199458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:276-458
               
               
               Cow position:chrX:5915244-5915431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:279-454
               
               
               Cow position:chrX:11602424-11602253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:279-455
               
               
               Cow position:chrX:26882021-26881844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:280-456
               
               
               Cow position:chrX:41215382-41215559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:282-445
               
               
               Cow position:chrX:22552917-22552754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:282-456
               
               
               Cow position:chrX:11589305-11589132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:284-449
               
               
               Cow position:chrX:9451409-9451570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:287-445
               
               
               Cow position:chrX:48574290-48574129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:287-454
               
               
               Cow position:chrX:16801196-16801034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:289-445
               
               
               Cow position:chrX:28106916-28107071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:290-445
               
               
               Cow position:chrX:33678403-33678245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:290-463
               
               
               Cow position:chrX:37717794-37717966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):159, 11

               
               
               Conread position:293-456
               
               
               Cow position:chrX:34194008-34193844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:294-456
               
               
               Cow position:chrX:42506875-42506711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 156

               
               
               Conread position:297-447
               
               
               Cow position:chrX:28167056-28167206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:304-461
               
               
               Cow position:chrX:42314807-42314648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:305-455
               
               
               Cow position:chrX:35509593-35509445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:305-456
               
               
               Cow position:chrX:1996366-1996215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:305-462
               
               
               Cow position:chrX:17929087-17929240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:307-457
               
               
               Cow position:chrX:11670774-11670924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:312-450
               
               
               Cow position:chrX:10479842-10479980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:321-456
               
               
               Cow position:chrX:41194007-41194142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:326-456
               
               
               Cow position:chrX:783551-783681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:334-458
               
               
               Cow position:chrX:19162016-19161890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 0
Show alignments to all cow chromosomes.