Cow genome map
| Conread name: | unkn-AR19A3 |
| Conread position: | 64-365 |
| Cow position: | chr29:37593351-37593643 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 206, 58 |
| Conread position: | 76-211 |
| Cow position: | chr29:11822146-11822276 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 131, 88 |
| Conread position: | 78-405 |
| Cow position: | chr29:11647338-11647027 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 292, 130 |
| Conread position: | 80-400 |
| Cow position: | chr29:28840396-28840096 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 81-330 |
| Cow position: | chr29:17022403-17022160 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 83-326 |
| Cow position: | chr29:28733890-28734122 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 129, 88 |
| Conread position: | 88-406 |
| Cow position: | chr29:10156052-10156368 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 77, 193 |
| Conread position: | 99-326 |
| Cow position: | chr29:29940871-29940654 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 201, 73 |
| Conread position: | 101-384 |
| Cow position: | chr29:683257-683531 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 125, 80 |
| Conread position: | 103-400 |
| Cow position: | chr29:31200474-31200198 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 106-400 |
| Cow position: | chr29:13866983-13867269 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 281, 79 |
| Conread position: | 108-408 |
| Cow position: | chr29:40874222-40873941 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 290, 54 |
| Conread position: | 127-397 |
| Cow position: | chr29:28049351-28049086 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 80, 163 |
| Conread position: | 163-405 |
| Cow position: | chr29:847465-847703 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 167-406 |
| Cow position: | chr29:23220327-23220565 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 173-406 |
| Cow position: | chr29:5186329-5186560 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 206, 15 |
| Conread position: | 185-395 |
| Cow position: | chr29:5892996-5892788 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 191, 31 |
| Conread position: | 185-405 |
| Cow position: | chr29:18085724-18085507 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 186-366 |
| Cow position: | chr29:39329449-39329629 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 187-406 |
| Cow position: | chr29:26559093-26559305 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 77 |
| Conread position: | 188-400 |
| Cow position: | chr29:30681563-30681769 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 190-405 |
| Cow position: | chr29:22714574-22714786 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 191-406 |
| Cow position: | chr29:23243731-23243943 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 193-369 |
| Cow position: | chr29:32210927-32211095 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 193-396 |
| Cow position: | chr29:23155374-23155174 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 136 |
| Conread position: | 193-406 |
| Cow position: | chr29:29314515-29314718 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 197-406 |
| Cow position: | chr29:8926320-8926528 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 175, 30 |
| Conread position: | 199-375 |
| Cow position: | chr29:21285498-21285325 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 200-348 |
| Cow position: | chr29:19125462-19125314 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 204-366 |
| Cow position: | chr29:26540408-26540566 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 204-371 |
| Cow position: | chr29:9310734-9310569 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 204-385 |
| Cow position: | chr29:29324290-29324465 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 204-406 |
| Cow position: | chr29:12680290-12680095 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 204-406 |
| Cow position: | chr29:45005493-45005694 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 170, 125 |
| Conread position: | 210-406 |
| Cow position: | chr29:21666218-21666024 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 168 |
| Conread position: | 211-406 |
| Cow position: | chr29:34358851-34359044 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 212-377 |
| Cow position: | chr29:22734979-22735142 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 93 |
| Conread position: | 216-406 |
| Cow position: | chr29:9709818-9709632 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 224-364 |
| Cow position: | chr29:36217227-36217091 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 224-376 |
| Cow position: | chr29:26756555-26756705 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 225-371 |
| Cow position: | chr29:17110071-17109929 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 225-384 |
| Cow position: | chr29:7624292-7624135 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 225-397 |
| Cow position: | chr29:4003006-4002834 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 225-404 |
| Cow position: | chr29:22613541-22613365 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 147, 8 |
| Conread position: | 225-404 |
| Cow position: | chr29:41112767-41112936 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 225-406 |
| Cow position: | chr29:4874766-4874951 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 225-406 |
| Cow position: | chr29:19762382-19762207 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 225-406 |
| Cow position: | chr29:34773621-34773797 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 225-406 |
| Cow position: | chr29:36530982-36530802 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 225-406 |
| Cow position: | chr29:40117685-40117507 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 225-406 |
| Cow position: | chr29:44139129-44139309 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 225-407 |
| Cow position: | chr29:29923458-29923640 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 226-398 |
| Cow position: | chr29:23825097-23825270 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 148, 7 |
| Conread position: | 226-400 |
| Cow position: | chr29:30708510-30708678 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-405 |
| Cow position: | chr29:20167538-20167360 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 226-406 |
| Cow position: | chr29:32176786-32176616 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 228-406 |
| Cow position: | chr29:25737300-25737481 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 228-406 |
| Cow position: | chr29:38978642-38978466 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 229-351 |
| Cow position: | chr29:19363821-19363700 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 229-363 |
| Cow position: | chr29:7290887-7290753 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-365 |
| Cow position: | chr29:22723712-22723576 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-399 |
| Cow position: | chr29:22166967-22167138 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 229-403 |
| Cow position: | chr29:4480062-4480232 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 229-404 |
| Cow position: | chr29:39111204-39111376 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 159, 21 |
| Conread position: | 229-405 |
| Cow position: | chr29:35501544-35501714 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 229-406 |
| Cow position: | chr29:1557042-1556868 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 229-406 |
| Cow position: | chr29:17607527-17607352 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 229-406 |
| Cow position: | chr29:19949418-19949238 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 74 |
| Conread position: | 229-406 |
| Cow position: | chr29:20770455-20770280 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 145, 79 |
| Conread position: | 229-406 |
| Cow position: | chr29:26615605-26615785 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 8, 159 |
| Conread position: | 229-406 |
| Cow position: | chr29:26778993-26778815 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 72 |
| Conread position: | 230-373 |
| Cow position: | chr29:32197807-32197664 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-406 |
| Cow position: | chr29:28196899-28197070 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 232-406 |
| Cow position: | chr29:18012666-18012491 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 233-364 |
| Cow position: | chr29:742542-742673 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-405 |
| Cow position: | chr29:27329999-27329830 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 234-377 |
| Cow position: | chr29:30918655-30918511 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 234-406 |
| Cow position: | chr29:22162143-22162316 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 238-405 |
| Cow position: | chr29:24578965-24578797 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 238-406 |
| Cow position: | chr29:43328746-43328577 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 242-406 |
| Cow position: | chr29:31674730-31674565 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 134, 13 |
| Conread position: | 243-406 |
| Cow position: | chr29:5063242-5063084 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 274-403 |
| Cow position: | chr29:31477047-31477177 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 91 |
Show alignments to all cow chromosomes.