Cow genome map

Conread name: unkn-IIU602653792.R1

Conread position: 1-254
Cow position: chr1:56193100-56193361 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 146

Conread position: 1-254
Cow position: chr1:69404076-69403813 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 97, 181

Conread position: 1-254
Cow position: chr1:74285719-74285983 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-270
Cow position: chr1:57663096-57662815 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 187
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 1-302
Cow position: chr1:99018939-99019251 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 102, 284

Conread position: 1-321
Cow position: chr1:53364627-53364301 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 268

Conread position: 1-345
Cow position: chr1:43570345-43570680 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 239
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 265

Conread position: 1-362
Cow position: chr1:15027427-15027079 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 102, 47

Conread position: 1-364
Cow position: chr1:5503037-5502684 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-364
Cow position: chr1:18241450-18241799 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 9

Conread position: 1-364
Cow position: chr1:26517817-26518170 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 110

Conread position: 1-364
Cow position: chr1:68606471-68606825 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-364
Cow position: chr1:69921364-69921719 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 219

Conread position: 1-367
Cow position: chr1:56143266-56143619 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 261

Conread position: 1-367
Cow position: chr1:94660744-94660388 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 43

Conread position: 1-368
Cow position: chr1:6195305-6194946 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr1:8826118-8825761 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 207

Conread position: 1-368
Cow position: chr1:25178958-25179315 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 161

Conread position: 1-368
Cow position: chr1:25551032-25550673 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr1:28874151-28873792 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 219

Conread position: 1-368
Cow position: chr1:30533950-30534306 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 146

Conread position: 1-368
Cow position: chr1:33551997-33551638 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 203

Conread position: 1-368
Cow position: chr1:48246907-48246544 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 212

Conread position: 1-368
Cow position: chr1:49973117-49973476 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr1:58336908-58336550 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr1:62805109-62805465 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 208

Conread position: 1-368
Cow position: chr1:65387390-65387040 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 257

Conread position: 1-368
Cow position: chr1:72081836-72081478 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 22

Conread position: 1-368
Cow position: chr1:72984568-72984215 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 30

Conread position: 1-368
Cow position: chr1:73069990-73070343 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 253
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 96, 26

Conread position: 1-368
Cow position: chr1:76544465-76544824 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 207

Conread position: 1-368
Cow position: chr1:79455884-79456258 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 222

Conread position: 1-368
Cow position: chr1:82923116-82923475 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 249
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 182

Conread position: 1-368
Cow position: chr1:88131844-88131488 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr1:91892048-91892404 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 160

Conread position: 1-368
Cow position: chr1:93855587-93855231 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 208

Conread position: 1-368
Cow position: chr1:99914496-99914135 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 267
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 96, 268

Conread position: 1-368
Cow position: chr1:102433970-102434326 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 146

Conread position: 2-270
Cow position: chr1:102781227-102781506 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 42

Conread position: 4-252
Cow position: chr1:24443262-24443522 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 4-343
Cow position: chr1:12061146-12061477 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 200

Conread position: 4-368
Cow position: chr1:63604706-63605064 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 177

Conread position: 4-368
Cow position: chr1:72185814-72186167 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 262

Conread position: 4-368
Cow position: chr1:85779379-85779726 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 253

Conread position: 4-369
Cow position: chr1:62243576-62243929 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 143

Conread position: 7-254
Cow position: chr1:17035537-17035794 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 88, 71

Conread position: 7-254
Cow position: chr1:32908883-32908630 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 163, 59

Conread position: 7-270
Cow position: chr1:18274256-18273979 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 33

Conread position: 7-344
Cow position: chr1:3384960-3385288 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 92, 201

Conread position: 7-364
Cow position: chr1:5356191-5355842 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-364
Cow position: chr1:21998892-21999238 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 48

Conread position: 7-364
Cow position: chr1:30282635-30282984 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 22, 153

Conread position: 7-364
Cow position: chr1:33852352-33852001 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 89, 154

Conread position: 7-364
Cow position: chr1:44044847-44044498 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-364
Cow position: chr1:53199603-53199256 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 67, 100

Conread position: 7-364
Cow position: chr1:60340365-60340015 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 154

Conread position: 7-364
Cow position: chr1:72038505-72038843 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 172

Conread position: 7-364
Cow position: chr1:89769651-89769991 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 106, 95

Conread position: 7-368
Cow position: chr1:8555394-8555040 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 202

Conread position: 7-368
Cow position: chr1:13451269-13450916 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chr1:21088480-21088125 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 155

Conread position: 7-368
Cow position: chr1:22843705-22843354 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 242
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 97, 85

Conread position: 7-368
Cow position: chr1:28711956-28711601 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chr1:29363358-29363009 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 149

Conread position: 7-368
Cow position: chr1:31365034-31365378 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 88, 27

Conread position: 7-368
Cow position: chr1:31397757-31397404 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 67, 154

Conread position: 7-368
Cow position: chr1:40575278-40574925 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 205

Conread position: 7-368
Cow position: chr1:57423772-57424129 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 67, 42

Conread position: 7-368
Cow position: chr1:58882718-58883071 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 91, 259

Conread position: 7-368
Cow position: chr1:59209085-59209438 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 88, 205

Conread position: 7-368
Cow position: chr1:61310285-61309931 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 97, 213

Conread position: 7-368
Cow position: chr1:67000074-66999724 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 27

Conread position: 7-368
Cow position: chr1:67287885-67287535 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 210

Conread position: 7-368
Cow position: chr1:71561508-71561861 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 212

Conread position: 7-368
Cow position: chr1:82912073-82912423 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chr1:86547077-86547430 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-369
Cow position: chr1:57657952-57657599 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 258
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 66, 175

Conread position: 7-369
Cow position: chr1:85792743-85792389 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 212

Conread position: 8-364
Cow position: chr1:69767517-69767170 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 58

Conread position: 10-363
Cow position: chr1:7141727-7142073 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 85, 137

Conread position: 11-368
Cow position: chr1:57568995-57568647 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 106

Conread position: 13-368
Cow position: chr1:88269173-88269525 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 242
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 82, 199

Conread position: 14-368
Cow position: chr1:38416934-38416601 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 247
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 81, 133

Conread position: 16-364
Cow position: chr1:29035331-29035004 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 245
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 100

Conread position: 28-363
Cow position: chr1:20829945-20829627 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 67, 110

Conread position: 28-368
Cow position: chr1:89426615-89426285 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 52

Conread position: 33-368
Cow position: chr1:81863467-81863792 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 62, 43

Conread position: 34-364
Cow position: chr1:91900055-91899720 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 236
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 61, 249

Conread position: 60-368
Cow position: chr1:82565511-82565215 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 108, 68

Conread position: 61-356
Cow position: chr1:11860242-11860526 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 105, 41

Conread position: 66-364
Cow position: chr1:56490856-56490567 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 94

Conread position: 96-368
Cow position: chr1:76751675-76751934 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 66, 50

Conread position: 126-368
Cow position: chr1:88563860-88564092 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 74

Conread position: 161-368
Cow position: chr1:33713003-33712806 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Show alignments to all cow chromosomes.