Cow genome map
| Conread name: | unkn-IIU602653792.R1 |
| Conread position: | 1-270 |
| Cow position: | chr16:1432524-1432240 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 33, 153 |
| Conread position: | 1-270 |
| Cow position: | chr16:5485064-5484786 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 96, 263 |
| Conread position: | 1-270 |
| Cow position: | chr16:43896943-43897222 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 96, 148 |
| Conread position: | 1-271 |
| Cow position: | chr16:28437058-28437335 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-343 |
| Cow position: | chr16:15185405-15185071 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-346 |
| Cow position: | chr16:15493836-15493499 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-346 |
| Cow position: | chr16:26664083-26663746 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-355 |
| Cow position: | chr16:23252102-23252446 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 161, 264 |
| Conread position: | 1-357 |
| Cow position: | chr16:7676124-7676467 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 97, 160 |
| Conread position: | 1-363 |
| Cow position: | chr16:16270807-16271160 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 223 |
| Conread position: | 1-363 |
| Cow position: | chr16:40295844-40296197 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 82 |
| Conread position: | 1-364 |
| Cow position: | chr16:2726955-2727309 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-364 |
| Cow position: | chr16:25258285-25257915 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 288 |
| Conread position: | 1-368 |
| Cow position: | chr16:406706-407059 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 96, 146 |
| Conread position: | 1-368 |
| Cow position: | chr16:1567120-1567478 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 199 |
| Conread position: | 1-368 |
| Cow position: | chr16:2410633-2410992 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 207 |
| Conread position: | 1-368 |
| Cow position: | chr16:8815773-8816130 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 207 |
| Conread position: | 1-368 |
| Cow position: | chr16:12537594-12537950 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 160 |
| Conread position: | 1-368 |
| Cow position: | chr16:14665477-14665838 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr16:25342302-25341931 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 270 |
| Conread position: | 1-368 |
| Cow position: | chr16:25457129-25457489 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 267 |
| Conread position: | 1-368 |
| Cow position: | chr16:27733465-27733817 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 118 |
| Conread position: | 1-368 |
| Cow position: | chr16:28170031-28170397 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 78, 166 |
| Conread position: | 1-368 |
| Cow position: | chr16:29034381-29034025 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 160 |
| Conread position: | 1-368 |
| Cow position: | chr16:29047350-29046997 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 1-369 |
| Cow position: | chr16:18497955-18498318 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 102, 128 |
| Conread position: | 4-270 |
| Cow position: | chr16:37455690-37455958 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 138 |
| Conread position: | 4-356 |
| Cow position: | chr16:4478653-4478996 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 93, 204 |
| Conread position: | 4-362 |
| Cow position: | chr16:42736073-42736412 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 4-368 |
| Cow position: | chr16:2482809-2483165 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 93, 262 |
| Conread position: | 4-368 |
| Cow position: | chr16:25441958-25441601 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 264 |
| Conread position: | 4-368 |
| Cow position: | chr16:28470771-28471127 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 216 |
| Conread position: | 7-335 |
| Cow position: | chr16:37480811-37481121 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 7-346 |
| Cow position: | chr16:31591592-31591923 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 199 |
| Conread position: | 7-363 |
| Cow position: | chr16:25085939-25085599 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 7-363 |
| Cow position: | chr16:28197348-28197698 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 155 |
| Conread position: | 7-364 |
| Cow position: | chr16:5662169-5661822 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 126 |
| Conread position: | 7-364 |
| Cow position: | chr16:46707039-46707388 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-368 |
| Cow position: | chr16:25188975-25188622 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-368 |
| Cow position: | chr16:28377545-28377192 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 7-369 |
| Cow position: | chr16:41162745-41163098 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 9-316 |
| Cow position: | chr16:4304939-4305237 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 14-368 |
| Cow position: | chr16:51084459-51084114 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 83, 206 |
| Conread position: | 15-368 |
| Cow position: | chr16:21185933-21185589 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 145 |
| Conread position: | 16-368 |
| Cow position: | chr16:11283629-11283284 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 204 |
| Conread position: | 23-368 |
| Cow position: | chr16:34530627-34530287 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 199 |
| Conread position: | 23-368 |
| Cow position: | chr16:41166459-41166796 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 181 |
| Conread position: | 28-368 |
| Cow position: | chr16:4302033-4302365 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 29-364 |
| Cow position: | chr16:10375295-10375620 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 67-363 |
| Cow position: | chr16:30049755-30049464 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 68-286 |
| Cow position: | chr16:49221666-49221889 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 96-368 |
| Cow position: | chr16:10203215-10203464 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 107-334 |
| Cow position: | chr16:7463897-7463678 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 108-345 |
| Cow position: | chr16:49234435-49234666 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 142-346 |
| Cow position: | chr16:15567226-15567031 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 59 |
Show alignments to all cow chromosomes.