Cow genome map
| Conread name: | unkn-IIU602653792.R1 |
| Conread position: | 1-254 |
| Cow position: | chr3:40343067-40342818 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 94, 184 |
| Conread position: | 1-267 |
| Cow position: | chr3:42994722-42995003 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-268 |
| Cow position: | chr3:48229535-48229802 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 1-270 |
| Cow position: | chr3:12678893-12679176 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-270 |
| Cow position: | chr3:18541195-18541474 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-270 |
| Cow position: | chr3:24445135-24445412 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 146 |
| Conread position: | 1-271 |
| Cow position: | chr3:49544264-49544545 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 1-271 |
| Cow position: | chr3:53412114-53411848 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 103, 165 |
| Conread position: | 1-343 |
| Cow position: | chr3:45773460-45773789 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 1-343 |
| Cow position: | chr3:48058410-48058742 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 93 |
| Conread position: | 1-346 |
| Cow position: | chr3:40824335-40824001 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 158 |
| Conread position: | 1-357 |
| Cow position: | chr3:30315499-30315162 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 1-363 |
| Cow position: | chr3:75040214-75040568 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-364 |
| Cow position: | chr3:6686753-6686401 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 1-364 |
| Cow position: | chr3:64356848-64357198 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 242 |
| Conread position: | 1-368 |
| Cow position: | chr3:2709922-2710281 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr3:2906825-2907182 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 1-368 |
| Cow position: | chr3:5884490-5884131 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr3:5953233-5953591 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 1-368 |
| Cow position: | chr3:23289388-23289746 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr3:57483784-57484136 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 96, 65 |
| Conread position: | 1-368 |
| Cow position: | chr3:59862319-59861962 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr3:64016433-64016773 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 161, 93 |
| Conread position: | 1-368 |
| Cow position: | chr3:68872806-68873165 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 1-368 |
| Cow position: | chr3:72631020-72630663 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 152 |
| Conread position: | 1-368 |
| Cow position: | chr3:78026474-78026830 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 1-369 |
| Cow position: | chr3:63002596-63002960 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 208 |
| Conread position: | 1-369 |
| Cow position: | chr3:66621129-66620770 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 206 |
| Conread position: | 2-270 |
| Cow position: | chr3:57753741-57753462 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 93, 158 |
| Conread position: | 2-364 |
| Cow position: | chr3:31420282-31419927 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 101, 231 |
| Conread position: | 2-364 |
| Cow position: | chr3:47177327-47177680 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 93, 157 |
| Conread position: | 2-364 |
| Cow position: | chr3:64651578-64651220 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 72, 158 |
| Conread position: | 2-368 |
| Cow position: | chr3:19756003-19756361 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 206 |
| Conread position: | 2-368 |
| Cow position: | chr3:19939840-19939480 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 3-270 |
| Cow position: | chr3:34029960-34030238 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-368 |
| Cow position: | chr3:18812444-18812097 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 7 |
| Conread position: | 4-252 |
| Cow position: | chr3:6877232-6877486 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 4-254 |
| Cow position: | chr3:5994145-5994406 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 5-368 |
| Cow position: | chr3:68699019-68699376 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 157 |
| Conread position: | 7-270 |
| Cow position: | chr3:29579565-29579293 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 81, 109 |
| Conread position: | 7-271 |
| Cow position: | chr3:58948557-58948281 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 7-276 |
| Cow position: | chr3:42052217-42052485 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 69 |
| Conread position: | 7-312 |
| Cow position: | chr3:27919363-27919049 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 88, 271 |
| Conread position: | 7-334 |
| Cow position: | chr3:63915175-63915495 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-346 |
| Cow position: | chr3:46503486-46503156 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 7-363 |
| Cow position: | chr3:42448046-42447700 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 7-364 |
| Cow position: | chr3:2869720-2869371 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-364 |
| Cow position: | chr3:7157784-7158133 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-364 |
| Cow position: | chr3:19879594-19879246 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 152 |
| Conread position: | 7-364 |
| Cow position: | chr3:20381483-20381134 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-364 |
| Cow position: | chr3:24315410-24315060 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 154 |
| Conread position: | 7-364 |
| Cow position: | chr3:36118603-36118255 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-367 |
| Cow position: | chr3:29330341-29330693 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 152 |
| Conread position: | 7-367 |
| Cow position: | chr3:49678739-49678391 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 7-368 |
| Cow position: | chr3:3840869-3841218 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 201 |
| Conread position: | 7-368 |
| Cow position: | chr3:7170140-7169796 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-368 |
| Cow position: | chr3:18860353-18860000 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-368 |
| Cow position: | chr3:32622100-32622455 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 7-368 |
| Cow position: | chr3:37969982-37969632 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 212 |
| Conread position: | 7-368 |
| Cow position: | chr3:41210793-41211145 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-368 |
| Cow position: | chr3:45033688-45033335 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-368 |
| Cow position: | chr3:46680368-46680017 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 143, 122 |
| Conread position: | 7-368 |
| Cow position: | chr3:46860361-46860714 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 205 |
| Conread position: | 7-368 |
| Cow position: | chr3:47080473-47080824 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 7-368 |
| Cow position: | chr3:50126685-50127045 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 111 |
| Conread position: | 8-368 |
| Cow position: | chr3:3523961-3523609 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 152 |
| Conread position: | 8-368 |
| Cow position: | chr3:45894614-45894963 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 52 |
| Conread position: | 8-368 |
| Cow position: | chr3:45975442-45975090 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 200 |
| Conread position: | 10-368 |
| Cow position: | chr3:19945167-19944822 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 198 |
| Conread position: | 14-270 |
| Cow position: | chr3:83232314-83232576 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 30 |
| Conread position: | 15-368 |
| Cow position: | chr3:42433148-42432808 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 147, 75 |
| Conread position: | 16-254 |
| Cow position: | chr3:18462638-18462887 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 16-333 |
| Cow position: | chr3:4287016-4286706 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 144 |
| Conread position: | 16-364 |
| Cow position: | chr3:7480299-7480637 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 16-368 |
| Cow position: | chr3:2918394-2918050 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 144 |
| Conread position: | 17-254 |
| Cow position: | chr3:83293981-83294228 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 23-346 |
| Cow position: | chr3:23213152-23213467 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 185 |
| Conread position: | 28-368 |
| Cow position: | chr3:30331565-30331898 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 45, 185 |
| Conread position: | 29-368 |
| Cow position: | chr3:40339194-40339525 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 131 |
| Conread position: | 29-368 |
| Cow position: | chr3:48843169-48842837 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 131 |
| Conread position: | 31-346 |
| Cow position: | chr3:34846063-34845748 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 7, 207 |
| Conread position: | 66-357 |
| Cow position: | chr3:56326803-56326524 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 196 |
| Conread position: | 131-368 |
| Cow position: | chr3:56146102-56145874 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 75 |
| Conread position: | 168-363 |
| Cow position: | chr3:4028673-4028479 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 95 |
Show alignments to all cow chromosomes.