Cow genome map
Conread name: | unkn-IIU602653792.R1 |
Conread position: | 1-252 |
Cow position: | chr5:27055831-27056095 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 189 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 1-335 |
Cow position: | chr5:39245963-39246290 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 246 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 102, 260 |
Conread position: | 1-355 |
Cow position: | chr5:6154052-6154397 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 108 |
Conread position: | 1-357 |
Cow position: | chr5:57481690-57482038 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 219 |
Conread position: | 1-364 |
Cow position: | chr5:31707399-31707044 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 208 |
Conread position: | 1-364 |
Cow position: | chr5:45701161-45700808 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 126 |
Conread position: | 1-368 |
Cow position: | chr5:1341184-1341542 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 65 |
Conread position: | 1-368 |
Cow position: | chr5:3503272-3503626 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 146 |
Conread position: | 1-368 |
Cow position: | chr5:3786768-3786412 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 207 |
Conread position: | 1-368 |
Cow position: | chr5:24099515-24099162 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 146 |
Conread position: | 1-368 |
Cow position: | chr5:46737727-46738084 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 74 |
Conread position: | 1-368 |
Cow position: | chr5:49519409-49519053 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 254 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 96, 207 |
Conread position: | 1-368 |
Cow position: | chr5:49591251-49591605 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 138 |
Conread position: | 1-368 |
Cow position: | chr5:55628840-55628481 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 207 |
Conread position: | 1-368 |
Cow position: | chr5:73488710-73489068 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 33 |
Conread position: | 2-254 |
Cow position: | chr5:27002854-27002594 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 181 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 13, 30 |
Conread position: | 4-334 |
Cow position: | chr5:46629335-46629666 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 234 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 77, 203 |
Conread position: | 4-364 |
Cow position: | chr5:3965296-3964942 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 157 |
Conread position: | 4-368 |
Cow position: | chr5:34697449-34697093 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 204 |
Conread position: | 4-368 |
Cow position: | chr5:48807893-48808249 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 200 |
Conread position: | 4-368 |
Cow position: | chr5:64781170-64781525 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 195 |
Conread position: | 4-369 |
Cow position: | chr5:37733189-37732840 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 65 |
Conread position: | 7-254 |
Cow position: | chr5:35526640-35526386 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 181 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 16, 96 |
Conread position: | 7-363 |
Cow position: | chr5:18121640-18121982 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 251 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 64, 118 |
Conread position: | 7-363 |
Cow position: | chr5:32773617-32773269 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 249 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 88, 153 |
Conread position: | 7-364 |
Cow position: | chr5:6588170-6588528 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 260 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 59, 163 |
Conread position: | 7-364 |
Cow position: | chr5:26078351-26078703 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 252 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 88, 65 |
Conread position: | 7-364 |
Cow position: | chr5:35300940-35300592 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 120 |
Conread position: | 7-364 |
Cow position: | chr5:42505847-42505497 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 206 |
Conread position: | 7-364 |
Cow position: | chr5:46005014-46005359 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 250 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 88, 113 |
Conread position: | 7-364 |
Cow position: | chr5:46645801-46645451 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 242 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 88, 37 |
Conread position: | 7-364 |
Cow position: | chr5:46808154-46807805 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 250 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 88, 153 |
Conread position: | 7-364 |
Cow position: | chr5:47830229-47830578 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 205 |
Conread position: | 7-368 |
Cow position: | chr5:2915289-2914939 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 140 |
Conread position: | 7-368 |
Cow position: | chr5:18664639-18664281 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 259 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 67, 158 |
Conread position: | 7-368 |
Cow position: | chr5:23959474-23959826 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 59 |
Conread position: | 7-368 |
Cow position: | chr5:27908428-27908783 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 254 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 67, 209 |
Conread position: | 7-368 |
Cow position: | chr5:28241895-28241544 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 242 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 93, 225 |
Conread position: | 7-368 |
Cow position: | chr5:30580172-30579817 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 258 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 93, 260 |
Conread position: | 7-368 |
Cow position: | chr5:38073874-38073521 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 153 |
Conread position: | 7-368 |
Cow position: | chr5:44460325-44459972 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 153 |
Conread position: | 7-368 |
Cow position: | chr5:45181302-45181655 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 153 |
Conread position: | 7-369 |
Cow position: | chr5:14784529-14784873 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 247 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 158, 36 |
Conread position: | 10-368 |
Cow position: | chr5:4386082-4385733 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 251 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 87, 50 |
Conread position: | 16-368 |
Cow position: | chr5:242028-241691 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 260 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 79, 96 |
Conread position: | 16-368 |
Cow position: | chr5:10919660-10919315 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 192 |
Conread position: | 17-319 |
Cow position: | chr5:32947892-32947594 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 216 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 80, 193 |
Conread position: | 26-368 |
Cow position: | chr5:29766707-29766378 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 241 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 69, 40 |
Conread position: | 28-368 |
Cow position: | chr5:4757342-4757674 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 189 |
Conread position: | 28-368 |
Cow position: | chr5:59061435-59061103 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 132 |
Conread position: | 29-368 |
Cow position: | chr5:4070034-4069710 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 238 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 68, 94 |
Conread position: | 37-368 |
Cow position: | chr5:41960916-41961234 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 79 |
Conread position: | 46-364 |
Cow position: | chr5:41527970-41528281 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 162 |
Conread position: | 50-367 |
Cow position: | chr5:44784115-44784423 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 231 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 45, 16 |
Conread position: | 54-368 |
Cow position: | chr5:48467485-48467791 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 221 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 41, 106 |
Conread position: | 60-368 |
Cow position: | chr5:7274618-7274321 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 229 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 37, 87 |
Conread position: | 124-368 |
Cow position: | chr5:59144966-59144731 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 171 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 26, 34 |
Conread position: | 144-368 |
Cow position: | chr5:2531956-2531744 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 157 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.