Cow genome map

Conread name: unkn-IIU602653792.R1

Conread position: 1-252
Cow position: chr5:27055831-27056095 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 108, 0

Conread position: 1-335
Cow position: chr5:39245963-39246290 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 102, 260

Conread position: 1-355
Cow position: chr5:6154052-6154397 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 108

Conread position: 1-357
Cow position: chr5:57481690-57482038 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 219

Conread position: 1-364
Cow position: chr5:31707399-31707044 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 208

Conread position: 1-364
Cow position: chr5:45701161-45700808 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 126

Conread position: 1-368
Cow position: chr5:1341184-1341542 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 65

Conread position: 1-368
Cow position: chr5:3503272-3503626 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 146

Conread position: 1-368
Cow position: chr5:3786768-3786412 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr5:24099515-24099162 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 146

Conread position: 1-368
Cow position: chr5:46737727-46738084 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 74

Conread position: 1-368
Cow position: chr5:49519409-49519053 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr5:49591251-49591605 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 138

Conread position: 1-368
Cow position: chr5:55628840-55628481 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chr5:73488710-73489068 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 33

Conread position: 2-254
Cow position: chr5:27002854-27002594 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 30

Conread position: 4-334
Cow position: chr5:46629335-46629666 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 77, 203

Conread position: 4-364
Cow position: chr5:3965296-3964942 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 157

Conread position: 4-368
Cow position: chr5:34697449-34697093 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 204

Conread position: 4-368
Cow position: chr5:48807893-48808249 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 200

Conread position: 4-368
Cow position: chr5:64781170-64781525 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 195

Conread position: 4-369
Cow position: chr5:37733189-37732840 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 65

Conread position: 7-254
Cow position: chr5:35526640-35526386 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 96

Conread position: 7-363
Cow position: chr5:18121640-18121982 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 251
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 64, 118

Conread position: 7-363
Cow position: chr5:32773617-32773269 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 88, 153

Conread position: 7-364
Cow position: chr5:6588170-6588528 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 59, 163

Conread position: 7-364
Cow position: chr5:26078351-26078703 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 252
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 88, 65

Conread position: 7-364
Cow position: chr5:35300940-35300592 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 120

Conread position: 7-364
Cow position: chr5:42505847-42505497 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 206

Conread position: 7-364
Cow position: chr5:46005014-46005359 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 250
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 88, 113

Conread position: 7-364
Cow position: chr5:46645801-46645451 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 242
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 88, 37

Conread position: 7-364
Cow position: chr5:46808154-46807805 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 153

Conread position: 7-364
Cow position: chr5:47830229-47830578 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 205

Conread position: 7-368
Cow position: chr5:2915289-2914939 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 140

Conread position: 7-368
Cow position: chr5:18664639-18664281 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 158

Conread position: 7-368
Cow position: chr5:23959474-23959826 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 59

Conread position: 7-368
Cow position: chr5:27908428-27908783 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 67, 209

Conread position: 7-368
Cow position: chr5:28241895-28241544 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 93, 225

Conread position: 7-368
Cow position: chr5:30580172-30579817 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 93, 260

Conread position: 7-368
Cow position: chr5:38073874-38073521 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chr5:44460325-44459972 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chr5:45181302-45181655 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-369
Cow position: chr5:14784529-14784873 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 158, 36

Conread position: 10-368
Cow position: chr5:4386082-4385733 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 251
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 87, 50

Conread position: 16-368
Cow position: chr5:242028-241691 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 79, 96

Conread position: 16-368
Cow position: chr5:10919660-10919315 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 192

Conread position: 17-319
Cow position: chr5:32947892-32947594 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 80, 193

Conread position: 26-368
Cow position: chr5:29766707-29766378 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 69, 40

Conread position: 28-368
Cow position: chr5:4757342-4757674 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 189

Conread position: 28-368
Cow position: chr5:59061435-59061103 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 132

Conread position: 29-368
Cow position: chr5:4070034-4069710 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 68, 94

Conread position: 37-368
Cow position: chr5:41960916-41961234 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 79

Conread position: 46-364
Cow position: chr5:41527970-41528281 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 50-367
Cow position: chr5:44784115-44784423 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 45, 16

Conread position: 54-368
Cow position: chr5:48467485-48467791 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 106

Conread position: 60-368
Cow position: chr5:7274618-7274321 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 37, 87

Conread position: 124-368
Cow position: chr5:59144966-59144731 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 34

Conread position: 144-368
Cow position: chr5:2531956-2531744 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.